Gene annotation
Transcriptome id Sobic.003G301400.2,Sobic.003G301400.1
Synonym Sb03g035050, POLH
Functional annotation DNA-directed polymerase, putative, expressed
UniProt C5XKS0 , A0A1W0VZL6
Pfam PF11799 PF00817
Panther DB PTHR11076 PTHR11076:SF38
NCBI CDD KOG2095; DNA polymerase iota/DNA damage inducible protein
KEGG Orthology K03509; DNA polymerase eta
Gene Ontology GO:0006281; DNA repair GO:0003684damaged DNA binding


Orthologs (automatic annotation)
TAIR AT5G44740 : Y-family DNA polymerase H
RAP-DB (Rice) LOC_Os01g55300.1 : DNA-directed polymerase, putative, expressed
MaizeGDB (Corn) Zm00025a055317 , Zm00025a018179 , Zm00025a032843 , Zm00025a027513
Brachypodium KQK09821
Barley HORVU3Hr1G072920.29 , HORVU3Hr1G072920.8 , HORVU3Hr1G072920.24 , HORVU3Hr1G072920.3 , HORVU3Hr1G072920.2 , HORVU3Hr1G072920.1 , HORVU3Hr1G072920.13 , HORVU3Hr1G072920.12 , HORVU3Hr1G072920.11 , HORVU3Hr1G072920.10 , HORVU3Hr1G072920.17 , HORVU3Hr1G072920.16 , HORVU3Hr1G072920.15 , HORVU3Hr1G072920.14 , HORVU3Hr1G072920.19 , HORVU3Hr1G072920.18 , HORVU3Hr1G072920.6 , HORVU3Hr1G072920.35 , HORVU3Hr1G072920.34 , HORVU3Hr1G072920.36 , HORVU3Hr1G072920.31 , HORVU3Hr1G072920.30 , HORVU3Hr1G072920.33 , HORVU3Hr1G072920.32 , HORVU3Hr1G072920.9 , HORVU3Hr1G072920.28 , HORVU3Hr1G072920.22 , HORVU3Hr1G072920.23 , HORVU3Hr1G072920.20 , HORVU3Hr1G072920.21 , HORVU3Hr1G072920.26 , HORVU3Hr1G072920.27 , HORVU3Hr1G072920.25
Wheat TraesCS3B02G329300 , TraesCS3B02G329300 , TraesCS3B02G329300 , TraesCS3B02G329300 , TraesCS3B02G329300 , TraesCS3B02G329300 , TraesCS3B02G329300 , TraesCS3B02G329300 , TraesCS3B02G329300 , TraesCS3A02G294700 , TraesCS3A02G294700 , TraesCS3A02G294700 , TraesCS3D02G294800 , TraesCS3D02G294800 , TraesCS3D02G294800 , TraesCS3D02G294800
Populus -


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cDNA sequences
Sobic.003G301400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G395600 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
2 Sobic.010G056100 HIRAN domain containing protein, putative, expressed K15363: FAN1, fanconi-associated nuclease 1
3 Sobic.010G195100 RNA recognition motif containing protein, putative, expressed -
4 Sobic.002G284600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR39 - Auxin-responsive SAUR gene family member, expressed -
5 Sobic.009G184900 OsDegp8 - Putative Deg protease homologue, expressed -
6 Sobic.007G177700 - -
7 Sobic.004G128100 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
8 Sobic.003G292500 ATP-dependent protease La, putative, expressed K11793: cereblon
9 Sobic.001G215700 - -
10 Sobic.009G237350 - -
11 Sobic.008G083600 nodulation protein-related, putative, expressed -
12 Sobic.004G262000 RNA recognition motif containing protein, putative, expressed -
13 Sobic.001G472666 - -
14 Sobic.003G334200 pentatricopeptide, putative, expressed -
15 Sobic.005G086250 - -
16 Sobic.010G026775 - -
17 Sobic.004G099800 expressed protein K14376: poly(A) polymerase
18 Sobic.009G245500 no apical meristem protein, putative, expressed -
19 Sobic.001G359900 expressed protein -
20 Sobic.006G157400 syntaxin-18, putative, expressed K08492: syntaxin 18


Gene co-expression network
sample Sobic003G301400 Sobic003G301400 Sobic003G395600 Sobic003G395600 Sobic003G301400--Sobic003G395600 Sobic010G056100 Sobic010G056100 Sobic003G301400--Sobic010G056100 Sobic010G195100 Sobic010G195100 Sobic003G301400--Sobic010G195100 Sobic002G284600 Sobic002G284600 Sobic003G301400--Sobic002G284600 Sobic009G184900 Sobic009G184900 Sobic003G301400--Sobic009G184900 Sobic007G177700 Sobic007G177700 Sobic003G301400--Sobic007G177700 Sobic004G128100 Sobic004G128100 Sobic003G301400--Sobic004G128100 Sobic003G292500 Sobic003G292500 Sobic003G301400--Sobic003G292500 Sobic001G215700 Sobic001G215700 Sobic003G301400--Sobic001G215700 Sobic003G395600--Sobic003G301400 Sobic003G395600--Sobic002G284600 Sobic008G083600 Sobic008G083600 Sobic003G395600--Sobic008G083600 Sobic003G395600--Sobic001G215700 Sobic003G395600--Sobic007G177700 Sobic003G009501 Sobic003G009501 Sobic003G395600--Sobic003G009501 Sobic003G395600--Sobic010G056100 Sobic003G395600--Sobic010G195100 Sobic003G395600--Sobic004G128100 Sobic010G056100--Sobic004G128100 Sobic010G066200 Sobic010G066200 Sobic010G056100--Sobic010G066200 Sobic010G056100--Sobic003G301400 Sobic006G141100 Sobic006G141100 Sobic010G056100--Sobic006G141100 Sobic010G056100--Sobic002G284600 Sobic010G063433 Sobic010G063433 Sobic010G056100--Sobic010G063433 Sobic003G077600 Sobic003G077600 Sobic010G056100--Sobic003G077600 Sobic010G056100--Sobic003G395600 Sobic001G192900 Sobic001G192900 Sobic010G056100--Sobic001G192900 Sobic005G055150 Sobic005G055150 Sobic010G195100--Sobic005G055150 Sobic001G479500 Sobic001G479500 Sobic010G195100--Sobic001G479500 Sobic006G009400 Sobic006G009400 Sobic010G195100--Sobic006G009400 Sobic009G127900 Sobic009G127900 Sobic010G195100--Sobic009G127900 Sobic001G128800 Sobic001G128800 Sobic010G195100--Sobic001G128800 Sobic006G196000 Sobic006G196000 Sobic010G195100--Sobic006G196000 Sobic007G178700 Sobic007G178700 Sobic010G195100--Sobic007G178700 Sobic001G454401 Sobic001G454401 Sobic010G195100--Sobic001G454401 Sobic001G543900 Sobic001G543900 Sobic010G195100--Sobic001G543900 Sobic009G237350 Sobic009G237350 Sobic002G284600--Sobic009G237350 Sobic008G178300 Sobic008G178300 Sobic002G284600--Sobic008G178300 Sobic008G178200 Sobic008G178200 Sobic002G284600--Sobic008G178200 Sobic002G284600--Sobic003G395600 Sobic002G054901 Sobic002G054901 Sobic002G284600--Sobic002G054901 Sobic002G284600--Sobic003G009501 Sobic004G087200 Sobic004G087200 Sobic002G284600--Sobic004G087200 Sobic003G311250 Sobic003G311250 Sobic002G284600--Sobic003G311250 Sobic010G222600 Sobic010G222600 Sobic002G284600--Sobic010G222600 Sobic009G210000 Sobic009G210000 Sobic009G184900--Sobic009G210000 Sobic007G020500 Sobic007G020500 Sobic009G184900--Sobic007G020500 Sobic005G086250 Sobic005G086250 Sobic009G184900--Sobic005G086250 Sobic001G359900 Sobic001G359900 Sobic009G184900--Sobic001G359900 Sobic003G334200 Sobic003G334200 Sobic009G184900--Sobic003G334200 Sobic003G290800 Sobic003G290800 Sobic009G184900--Sobic003G290800 Sobic007G202900 Sobic007G202900 Sobic009G184900--Sobic007G202900 Sobic009G008400 Sobic009G008400 Sobic009G184900--Sobic009G008400 Sobic007G116200 Sobic007G116200 Sobic009G184900--Sobic007G116200 Sobic010G248200 Sobic010G248200 Sobic007G177700--Sobic010G248200 Sobic001G345333 Sobic001G345333 Sobic007G177700--Sobic001G345333 Sobic007G177700--Sobic001G192900 Sobic007G177700--Sobic010G195100 Sobic004G212800 Sobic004G212800 Sobic007G177700--Sobic004G212800 Sobic004G076732 Sobic004G076732 Sobic007G177700--Sobic004G076732 Sobic010G218500 Sobic010G218500 Sobic007G177700--Sobic010G218500 Sobic007G132600 Sobic007G132600 Sobic007G177700--Sobic007G132600 Sobic008G061500 Sobic008G061500 Sobic007G177700--Sobic008G061500 Sobic004G128100--Sobic010G056100 Sobic004G299300 Sobic004G299300 Sobic004G128100--Sobic004G299300 Sobic009G105500 Sobic009G105500 Sobic004G128100--Sobic009G105500 Sobic003G097000 Sobic003G097000 Sobic004G128100--Sobic003G097000 Sobic004G199500 Sobic004G199500 Sobic004G128100--Sobic004G199500 Sobic009G027200 Sobic009G027200 Sobic004G128100--Sobic009G027200 Sobic001G041900 Sobic001G041900 Sobic004G128100--Sobic001G041900 Sobic004G128100--Sobic003G301400 Sobic004G128100--Sobic003G395600 Sobic004G078400 Sobic004G078400 Sobic003G292500--Sobic004G078400 Sobic010G103000 Sobic010G103000 Sobic003G292500--Sobic010G103000 Sobic005G110550 Sobic005G110550 Sobic003G292500--Sobic005G110550 Sobic001G491700 Sobic001G491700 Sobic003G292500--Sobic001G491700 Sobic003G379400 Sobic003G379400 Sobic003G292500--Sobic003G379400 Sobic001G250800 Sobic001G250800 Sobic003G292500--Sobic001G250800 Sobic006G236100 Sobic006G236100 Sobic003G292500--Sobic006G236100 Sobic004G131350 Sobic004G131350 Sobic003G292500--Sobic004G131350 Sobic003G292500--Sobic003G301400 Sobic001G215700--Sobic003G009501 Sobic008G138850 Sobic008G138850 Sobic001G215700--Sobic008G138850 Sobic009G255400 Sobic009G255400 Sobic001G215700--Sobic009G255400 Sobic001G325100 Sobic001G325100 Sobic001G215700--Sobic001G325100 Sobic009G078300 Sobic009G078300 Sobic001G215700--Sobic009G078300 Sobic001G065150 Sobic001G065150 Sobic001G215700--Sobic001G065150 Sobic008G174200 Sobic008G174200 Sobic001G215700--Sobic008G174200 Sobic009G078401 Sobic009G078401 Sobic001G215700--Sobic009G078401 Sobic007G179332 Sobic007G179332 Sobic001G215700--Sobic007G179332
Octagon: transcription factors


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