Gene annotation
Transcriptome id Sobic.003G334200.1
Synonym SLO1, Sb03g037910
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1W0W058
Pfam PF12854 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF633
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G22410 : SLOW GROWTH 1
RAP-DB (Rice) LOC_Os01g60000.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a039793
Brachypodium PNT73101
Barley HORVU3Hr1G080120.11 , HORVU3Hr1G080120.3 , HORVU3Hr1G080120.1 , HORVU3Hr1G080120.6 , HORVU3Hr1G080120.7 , HORVU3Hr1G080120.4 , HORVU3Hr1G080120.5 , HORVU3Hr1G080120.8 , HORVU3Hr1G080120.9 , HORVU3Hr1G080120.10 , HORVU3Hr1G080120.12
Wheat TraesCS3A02G339300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G184900 OsDegp8 - Putative Deg protease homologue, expressed -
2 Sobic.008G055300 UDP-N-acetylglucosamine transferase subunit ALG14, putative, expressed K07441: beta-1,4-N-acetylglucosaminyltransferase
3 Sobic.005G086250 - -
4 Sobic.009G210000 ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
5 Sobic.003G301400 DNA-directed polymerase, putative, expressed K03509: DNA polymerase eta
6 Sobic.010G232200 - -
7 Sobic.009G184600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
8 Sobic.003G434800 PPR repeat domain containing protein, putative, expressed -
9 Sobic.009G149700 hydrolase, alpha/beta fold family domain containing protein, expressed -
10 Sobic.006G176800 "OsMKKK10(Ortholog in rice:Gou et al., 2018)"(PubMedID : 31659898)@STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
11 Sobic.004G356000 expressed protein K19022: AP-5 complex subunit beta-1
12 Sobic.010G138200 expressed protein K18749: LSM14, RAP55, protein LSM14
13 Sobic.003G292500 ATP-dependent protease La, putative, expressed K11793: cereblon
14 Sobic.001G212100 GEM, putative, expressed -
15 Sobic.002G370200 agenet domain-containing protein, putative, expressed -
16 Sobic.007G020500 expressed protein K15198: BDP1, transcription factor TFIIIB component B''
17 Sobic.001G097200 phosphatidylinositol kinase, putative, expressed K08873: serine/threonine-protein kinase SMG1
18 Sobic.002G197300 MSH-like DNA mismatch repair protein, putative, expressed K08737: DNA mismatch repair protein MSH6
19 Sobic.001G472666 - -
20 Sobic.003G354300 csAtPR5, putative, expressed -


Gene co-expression network
sample Sobic003G334200 Sobic003G334200 Sobic009G184900 Sobic009G184900 Sobic003G334200--Sobic009G184900 Sobic008G055300 Sobic008G055300 Sobic003G334200--Sobic008G055300 Sobic005G086250 Sobic005G086250 Sobic003G334200--Sobic005G086250 Sobic009G210000 Sobic009G210000 Sobic003G334200--Sobic009G210000 Sobic003G301400 Sobic003G301400 Sobic003G334200--Sobic003G301400 Sobic010G232200 Sobic010G232200 Sobic003G334200--Sobic010G232200 Sobic009G184600 Sobic009G184600 Sobic003G334200--Sobic009G184600 Sobic003G434800 Sobic003G434800 Sobic003G334200--Sobic003G434800 Sobic009G149700 Sobic009G149700 Sobic003G334200--Sobic009G149700 Sobic009G184900--Sobic009G210000 Sobic007G020500 Sobic007G020500 Sobic009G184900--Sobic007G020500 Sobic009G184900--Sobic005G086250 Sobic001G359900 Sobic001G359900 Sobic009G184900--Sobic001G359900 Sobic009G184900--Sobic003G334200 Sobic003G290800 Sobic003G290800 Sobic009G184900--Sobic003G290800 Sobic007G202900 Sobic007G202900 Sobic009G184900--Sobic007G202900 Sobic009G008400 Sobic009G008400 Sobic009G184900--Sobic009G008400 Sobic007G116200 Sobic007G116200 Sobic009G184900--Sobic007G116200 Sobic008G055300--Sobic005G086250 Sobic008G055300--Sobic003G334200 Sobic008G055300--Sobic009G184900 Sobic003G216300 Sobic003G216300 Sobic008G055300--Sobic003G216300 Sobic005G095680 Sobic005G095680 Sobic008G055300--Sobic005G095680 Sobic008G055300--Sobic009G210000 Sobic003G334300 Sobic003G334300 Sobic008G055300--Sobic003G334300 Sobic008G055300--Sobic003G290800 Sobic008G055300--Sobic003G434800 Sobic005G086250--Sobic009G184900 Sobic005G086250--Sobic008G055300 Sobic003G187300 Sobic003G187300 Sobic005G086250--Sobic003G187300 Sobic003G030500 Sobic003G030500 Sobic005G086250--Sobic003G030500 Sobic006G049200 Sobic006G049200 Sobic005G086250--Sobic006G049200 Sobic001G087800 Sobic001G087800 Sobic005G086250--Sobic001G087800 Sobic005G086250--Sobic003G334200 Sobic005G086250--Sobic003G301400 Sobic004G246000 Sobic004G246000 Sobic005G086250--Sobic004G246000 Sobic009G210000--Sobic009G184900 Sobic004G253050 Sobic004G253050 Sobic009G210000--Sobic004G253050 Sobic009G210000--Sobic007G116200 Sobic003G262200 Sobic003G262200 Sobic009G210000--Sobic003G262200 Sobic009G210000--Sobic001G359900 Sobic004G359800 Sobic004G359800 Sobic009G210000--Sobic004G359800 Sobic001G204000 Sobic001G204000 Sobic009G210000--Sobic001G204000 Sobic010G219600 Sobic010G219600 Sobic009G210000--Sobic010G219600 Sobic005G149200 Sobic005G149200 Sobic009G210000--Sobic005G149200 Sobic003G395600 Sobic003G395600 Sobic003G301400--Sobic003G395600 Sobic010G056100 Sobic010G056100 Sobic003G301400--Sobic010G056100 Sobic010G195100 Sobic010G195100 Sobic003G301400--Sobic010G195100 Sobic002G284600 Sobic002G284600 Sobic003G301400--Sobic002G284600 Sobic003G301400--Sobic009G184900 Sobic007G177700 Sobic007G177700 Sobic003G301400--Sobic007G177700 Sobic004G128100 Sobic004G128100 Sobic003G301400--Sobic004G128100 Sobic003G292500 Sobic003G292500 Sobic003G301400--Sobic003G292500 Sobic001G215700 Sobic001G215700 Sobic003G301400--Sobic001G215700 Sobic006G079400 Sobic006G079400 Sobic010G232200--Sobic006G079400 Sobic004G258700 Sobic004G258700 Sobic010G232200--Sobic004G258700 Sobic002G318700 Sobic002G318700 Sobic010G232200--Sobic002G318700 Sobic008G028700 Sobic008G028700 Sobic010G232200--Sobic008G028700 Sobic007G161000 Sobic007G161000 Sobic010G232200--Sobic007G161000 Sobic004G040350 Sobic004G040350 Sobic010G232200--Sobic004G040350 Sobic002G145101 Sobic002G145101 Sobic010G232200--Sobic002G145101 Sobic007G074600 Sobic007G074600 Sobic010G232200--Sobic007G074600 Sobic004G208900 Sobic004G208900 Sobic010G232200--Sobic004G208900 Sobic010G012100 Sobic010G012100 Sobic009G184600--Sobic010G012100 Sobic005G180900 Sobic005G180900 Sobic009G184600--Sobic005G180900 Sobic006G177200 Sobic006G177200 Sobic009G184600--Sobic006G177200 Sobic003G309050 Sobic003G309050 Sobic009G184600--Sobic003G309050 Sobic001G097200 Sobic001G097200 Sobic009G184600--Sobic001G097200 Sobic006G176800 Sobic006G176800 Sobic009G184600--Sobic006G176800 Sobic001G491700 Sobic001G491700 Sobic009G184600--Sobic001G491700 Sobic004G010200 Sobic004G010200 Sobic009G184600--Sobic004G010200 Sobic004G342300 Sobic004G342300 Sobic009G184600--Sobic004G342300 Sobic003G434800--Sobic003G290800 Sobic002G413600 Sobic002G413600 Sobic003G434800--Sobic002G413600 Sobic010G110400 Sobic010G110400 Sobic003G434800--Sobic010G110400 Sobic002G118200 Sobic002G118200 Sobic003G434800--Sobic002G118200 Sobic003G203300 Sobic003G203300 Sobic003G434800--Sobic003G203300 Sobic007G192600 Sobic007G192600 Sobic003G434800--Sobic007G192600 Sobic005G118400 Sobic005G118400 Sobic003G434800--Sobic005G118400 Sobic001G219700 Sobic001G219700 Sobic003G434800--Sobic001G219700 Sobic003G379400 Sobic003G379400 Sobic003G434800--Sobic003G379400 Sobic001G474600 Sobic001G474600 Sobic009G149700--Sobic001G474600 Sobic007G217000 Sobic007G217000 Sobic009G149700--Sobic007G217000 Sobic001G376100 Sobic001G376100 Sobic009G149700--Sobic001G376100 Sobic001G451400 Sobic001G451400 Sobic009G149700--Sobic001G451400 Sobic009G165700 Sobic009G165700 Sobic009G149700--Sobic009G165700 Sobic001G389100 Sobic001G389100 Sobic009G149700--Sobic001G389100 Sobic004G072100 Sobic004G072100 Sobic009G149700--Sobic004G072100 Sobic007G008900 Sobic007G008900 Sobic009G149700--Sobic007G008900 Sobic002G332750 Sobic002G332750 Sobic009G149700--Sobic002G332750
Octagon: transcription factors


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