Gene annotation
Transcriptome id Sobic.003G434800.1
Synonym Sb03g046570
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1B6Q8E2
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF487
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26790 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g43080.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a054836 , Zm00025a025905
Brachypodium KQJ92119
Barley HORVU6Hr1G087800.30 , HORVU6Hr1G087800.55 , HORVU6Hr1G087800.54 , HORVU6Hr1G087800.56 , HORVU6Hr1G087800.51 , HORVU6Hr1G087800.50 , HORVU6Hr1G087800.53 , HORVU6Hr1G087800.52 , HORVU6Hr1G087800.48 , HORVU6Hr1G087800.49 , HORVU6Hr1G087800.42 , HORVU6Hr1G087800.43 , HORVU6Hr1G087800.40 , HORVU6Hr1G087800.41 , HORVU6Hr1G087800.46 , HORVU6Hr1G087800.47 , HORVU6Hr1G087800.44 , HORVU6Hr1G087800.45 , HORVU6Hr1G087800.39 , HORVU6Hr1G087800.38 , HORVU6Hr1G087800.36 , HORVU6Hr1G087800.35 , HORVU6Hr1G087800.34 , HORVU6Hr1G087800.33 , HORVU6Hr1G087800.32 , HORVU6Hr1G087800.37 , HORVU6Hr1G087800.28 , HORVU6Hr1G087800.31 , HORVU6Hr1G087800.25 , HORVU6Hr1G087800.26 , HORVU6Hr1G087800.27 , HORVU6Hr1G087800.20 , HORVU6Hr1G087800.21 , HORVU6Hr1G087800.22 , HORVU6Hr1G087800.23 , HORVU6Hr1G087800.11 , HORVU6Hr1G087800.10 , HORVU6Hr1G087800.13 , HORVU6Hr1G087800.15 , HORVU6Hr1G087800.14 , HORVU6Hr1G087800.17 , HORVU6Hr1G087800.16 , HORVU6Hr1G087800.19 , HORVU6Hr1G087800.5 , HORVU6Hr1G087800.4 , HORVU6Hr1G087800.7 , HORVU6Hr1G087800.6 , HORVU6Hr1G087800.1 , HORVU6Hr1G087800.3 , HORVU6Hr1G087800.2 , HORVU6Hr1G087800.9 , HORVU6Hr1G087800.8 , HORVU6Hr1G087800.29
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G290800 starch binding domain containing protein, putative, expressed -
2 Sobic.002G413600 ulp1 protease family protein, putative, expressed K08592: sentrin-specific protease 1
3 Sobic.010G110400 - -
4 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
5 Sobic.003G203300 stress regulated protein, putative, expressed -
6 Sobic.007G192600 FACT complex subunit SPT16, putative, expressed -
7 Sobic.005G118400 expressed protein -
8 Sobic.001G219700 pentatricopeptide, putative, expressed -
9 Sobic.003G379400 PHD-finger domain containing protein, putative -
10 Sobic.003G379301 - -
11 Sobic.003G190000 PPR repeat domain containing protein, putative, expressed -
12 Sobic.007G111400 - -
13 Sobic.001G060500 YT521-B, putative, expressed -
14 Sobic.001G530900 expressed protein -
15 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
16 Sobic.002G033300 expressed protein -
17 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
18 Sobic.003G101700 dnaJ domain containing protein, expressed -
19 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
20 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -


Gene co-expression network
sample Sobic003G434800 Sobic003G434800 Sobic003G290800 Sobic003G290800 Sobic003G434800--Sobic003G290800 Sobic002G413600 Sobic002G413600 Sobic003G434800--Sobic002G413600 Sobic010G110400 Sobic010G110400 Sobic003G434800--Sobic010G110400 Sobic002G118200 Sobic002G118200 Sobic003G434800--Sobic002G118200 Sobic003G203300 Sobic003G203300 Sobic003G434800--Sobic003G203300 Sobic007G192600 Sobic007G192600 Sobic003G434800--Sobic007G192600 Sobic005G118400 Sobic005G118400 Sobic003G434800--Sobic005G118400 Sobic001G219700 Sobic001G219700 Sobic003G434800--Sobic001G219700 Sobic003G379400 Sobic003G379400 Sobic003G434800--Sobic003G379400 Sobic007G185700 Sobic007G185700 Sobic003G290800--Sobic007G185700 Sobic003G290800--Sobic002G118200 Sobic001G261573 Sobic001G261573 Sobic003G290800--Sobic001G261573 Sobic003G290800--Sobic005G118400 Sobic001G530900 Sobic001G530900 Sobic003G290800--Sobic001G530900 Sobic010G153201 Sobic010G153201 Sobic003G290800--Sobic010G153201 Sobic002G231200 Sobic002G231200 Sobic003G290800--Sobic002G231200 Sobic003G290800--Sobic003G434800 Sobic003G146500 Sobic003G146500 Sobic003G290800--Sobic003G146500 Sobic002G413600--Sobic003G434800 Sobic004G178500 Sobic004G178500 Sobic002G413600--Sobic004G178500 Sobic001G060500 Sobic001G060500 Sobic002G413600--Sobic001G060500 Sobic002G339300 Sobic002G339300 Sobic002G413600--Sobic002G339300 Sobic003G193200 Sobic003G193200 Sobic002G413600--Sobic003G193200 Sobic002G173100 Sobic002G173100 Sobic002G413600--Sobic002G173100 Sobic001G081200 Sobic001G081200 Sobic002G413600--Sobic001G081200 Sobic003G190000 Sobic003G190000 Sobic002G413600--Sobic003G190000 Sobic002G413600--Sobic003G290800 Sobic006G233700 Sobic006G233700 Sobic010G110400--Sobic006G233700 Sobic010G110400--Sobic003G203300 Sobic009G170200 Sobic009G170200 Sobic010G110400--Sobic009G170200 Sobic002G198300 Sobic002G198300 Sobic010G110400--Sobic002G198300 Sobic001G500600 Sobic001G500600 Sobic010G110400--Sobic001G500600 Sobic004G300100 Sobic004G300100 Sobic010G110400--Sobic004G300100 Sobic003G070900 Sobic003G070900 Sobic010G110400--Sobic003G070900 Sobic006G197300 Sobic006G197300 Sobic010G110400--Sobic006G197300 Sobic001G378100 Sobic001G378100 Sobic010G110400--Sobic001G378100 Sobic007G005400 Sobic007G005400 Sobic002G118200--Sobic007G005400 Sobic005G084500 Sobic005G084500 Sobic002G118200--Sobic005G084500 Sobic001G531500 Sobic001G531500 Sobic002G118200--Sobic001G531500 Sobic003G085100 Sobic003G085100 Sobic002G118200--Sobic003G085100 Sobic002G258600 Sobic002G258600 Sobic002G118200--Sobic002G258600 Sobic009G123900 Sobic009G123900 Sobic002G118200--Sobic009G123900 Sobic004G019800 Sobic004G019800 Sobic002G118200--Sobic004G019800 Sobic009G093100 Sobic009G093100 Sobic002G118200--Sobic009G093100 Sobic008G074000 Sobic008G074000 Sobic002G118200--Sobic008G074000 Sobic006G232600 Sobic006G232600 Sobic003G203300--Sobic006G232600 Sobic003G203300--Sobic008G074000 Sobic003G203300--Sobic001G378100 Sobic003G203300--Sobic009G093100 Sobic003G203300--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic003G203300--Sobic001G504400 Sobic002G081400 Sobic002G081400 Sobic003G203300--Sobic002G081400 Sobic003G203300--Sobic006G233700 Sobic004G207400 Sobic004G207400 Sobic003G203300--Sobic004G207400 Sobic002G124600 Sobic002G124600 Sobic007G192600--Sobic002G124600 Sobic004G263600 Sobic004G263600 Sobic007G192600--Sobic004G263600 Sobic009G003300 Sobic009G003300 Sobic007G192600--Sobic009G003300 Sobic001G374100 Sobic001G374100 Sobic007G192600--Sobic001G374100 Sobic007G192600--Sobic001G530900 Sobic006G234601 Sobic006G234601 Sobic007G192600--Sobic006G234601 Sobic008G044100 Sobic008G044100 Sobic007G192600--Sobic008G044100 Sobic001G519900 Sobic001G519900 Sobic007G192600--Sobic001G519900 Sobic004G134200 Sobic004G134200 Sobic007G192600--Sobic004G134200 Sobic010G002700 Sobic010G002700 Sobic005G118400--Sobic010G002700 Sobic005G068700 Sobic005G068700 Sobic005G118400--Sobic005G068700 Sobic005G118400--Sobic001G378100 Sobic001G540600 Sobic001G540600 Sobic005G118400--Sobic001G540600 Sobic003G185900 Sobic003G185900 Sobic005G118400--Sobic003G185900 Sobic005G118400--Sobic001G504400 Sobic008G033000 Sobic008G033000 Sobic005G118400--Sobic008G033000 Sobic005G118400--Sobic001G530900 Sobic002G056500 Sobic002G056500 Sobic005G118400--Sobic002G056500 Sobic001G219700--Sobic006G233700 Sobic004G026500 Sobic004G026500 Sobic001G219700--Sobic004G026500 Sobic001G124100 Sobic001G124100 Sobic001G219700--Sobic001G124100 Sobic001G219700--Sobic003G203300 Sobic008G081900 Sobic008G081900 Sobic001G219700--Sobic008G081900 Sobic002G129400 Sobic002G129400 Sobic001G219700--Sobic002G129400 Sobic001G219700--Sobic005G084500 Sobic009G241200 Sobic009G241200 Sobic001G219700--Sobic009G241200 Sobic002G349100 Sobic002G349100 Sobic001G219700--Sobic002G349100 Sobic003G379301 Sobic003G379301 Sobic003G379400--Sobic003G379301 Sobic003G379400--Sobic003G434800 Sobic003G354300 Sobic003G354300 Sobic003G379400--Sobic003G354300 Sobic003G161100 Sobic003G161100 Sobic003G379400--Sobic003G161100 Sobic004G099800 Sobic004G099800 Sobic003G379400--Sobic004G099800 Sobic003G332700 Sobic003G332700 Sobic003G379400--Sobic003G332700 Sobic003G379400--Sobic007G192600 Sobic003G292500 Sobic003G292500 Sobic003G379400--Sobic003G292500 Sobic003G379400--Sobic001G530900
Octagon: transcription factors


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