Gene annotation
Transcriptome id Sobic.002G413600.2,Sobic.002G413600.1
Synonym ESD4, ATESD4, Sb02g042620
Functional annotation ulp1 protease family protein, putative, expressed
UniProt A0A1B6QG71 , A0A1W0W7S7
Pfam PF02902
Panther DB PTHR12606 PTHR12606:SF33
NCBI CDD KOG3246; Sentrin-specific cysteine protease (Ulp1 family)
KEGG Orthology K08592; sentrin-specific protease 1
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT4G15880 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os03g22400.2,LOC_Os03g29630.1 : ulp1 protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a015418
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G434800 PPR repeat domain containing protein, putative, expressed -
2 Sobic.004G178500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 7, putative, expressed K14486: K14486, auxin response factor
3 Sobic.001G060500 YT521-B, putative, expressed -
4 Sobic.002G339300 myosin-Vb, putative, expressed K10357: myosin V
5 Sobic.003G193200 expressed protein -
6 Sobic.002G173100 Leucine Rich Repeat family protein, expressed -
7 Sobic.001G081200 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
8 Sobic.003G190000 PPR repeat domain containing protein, putative, expressed -
9 Sobic.003G290800 starch binding domain containing protein, putative, expressed -
10 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
11 Sobic.001G298900 agenet domain containing protein, putative, expressed -
12 Sobic.004G025800 phosphoribosyl transferase, putative, expressed K00948: PRPS, ribose-phosphate pyrophosphokinase
13 Sobic.006G270700 - -
14 Sobic.010G077400 nitrilase, putative, expressed K13566: NIT2, omega-amidase
15 Sobic.003G101700 dnaJ domain containing protein, expressed -
16 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
17 Sobic.005G075100 rp3 protein, putative, expressed -
18 Sobic.003G391400 recA protein, putative, expressed K03553: recombination protein RecA
19 Sobic.002G169400 Leucine Rich Repeat family protein, expressed -
20 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I


Gene co-expression network
sample Sobic002G413600 Sobic002G413600 Sobic003G434800 Sobic003G434800 Sobic002G413600--Sobic003G434800 Sobic004G178500 Sobic004G178500 Sobic002G413600--Sobic004G178500 Sobic001G060500 Sobic001G060500 Sobic002G413600--Sobic001G060500 Sobic002G339300 Sobic002G339300 Sobic002G413600--Sobic002G339300 Sobic003G193200 Sobic003G193200 Sobic002G413600--Sobic003G193200 Sobic002G173100 Sobic002G173100 Sobic002G413600--Sobic002G173100 Sobic001G081200 Sobic001G081200 Sobic002G413600--Sobic001G081200 Sobic003G190000 Sobic003G190000 Sobic002G413600--Sobic003G190000 Sobic003G290800 Sobic003G290800 Sobic002G413600--Sobic003G290800 Sobic003G434800--Sobic003G290800 Sobic003G434800--Sobic002G413600 Sobic010G110400 Sobic010G110400 Sobic003G434800--Sobic010G110400 Sobic002G118200 Sobic002G118200 Sobic003G434800--Sobic002G118200 Sobic003G203300 Sobic003G203300 Sobic003G434800--Sobic003G203300 Sobic007G192600 Sobic007G192600 Sobic003G434800--Sobic007G192600 Sobic005G118400 Sobic005G118400 Sobic003G434800--Sobic005G118400 Sobic001G219700 Sobic001G219700 Sobic003G434800--Sobic001G219700 Sobic003G379400 Sobic003G379400 Sobic003G434800--Sobic003G379400 Sobic001G298900 Sobic001G298900 Sobic004G178500--Sobic001G298900 Sobic002G198200 Sobic002G198200 Sobic004G178500--Sobic002G198200 Sobic004G181600 Sobic004G181600 Sobic004G178500--Sobic004G181600 Sobic008G044100 Sobic008G044100 Sobic004G178500--Sobic008G044100 Sobic006G133900 Sobic006G133900 Sobic004G178500--Sobic006G133900 Sobic006G065600 Sobic006G065600 Sobic004G178500--Sobic006G065600 Sobic006G270700 Sobic006G270700 Sobic004G178500--Sobic006G270700 Sobic001G365900 Sobic001G365900 Sobic004G178500--Sobic001G365900 Sobic003G388100 Sobic003G388100 Sobic004G178500--Sobic003G388100 Sobic006G233700 Sobic006G233700 Sobic001G060500--Sobic006G233700 Sobic004G179400 Sobic004G179400 Sobic001G060500--Sobic004G179400 Sobic002G073200 Sobic002G073200 Sobic001G060500--Sobic002G073200 Sobic001G060500--Sobic003G190000 Sobic001G060500--Sobic003G203300 Sobic001G060500--Sobic002G173100 Sobic001G060500--Sobic010G110400 Sobic003G125900 Sobic003G125900 Sobic001G060500--Sobic003G125900 Sobic003G108900 Sobic003G108900 Sobic001G060500--Sobic003G108900 Sobic004G262700 Sobic004G262700 Sobic002G339300--Sobic004G262700 Sobic004G026500 Sobic004G026500 Sobic002G339300--Sobic004G026500 Sobic009G193500 Sobic009G193500 Sobic002G339300--Sobic009G193500 Sobic001G124100 Sobic001G124100 Sobic002G339300--Sobic001G124100 Sobic001G396000 Sobic001G396000 Sobic002G339300--Sobic001G396000 Sobic002G339300--Sobic003G193200 Sobic002G339300--Sobic003G190000 Sobic002G168500 Sobic002G168500 Sobic002G339300--Sobic002G168500 Sobic010G197000 Sobic010G197000 Sobic002G339300--Sobic010G197000 Sobic003G193200--Sobic002G339300 Sobic002G418600 Sobic002G418600 Sobic003G193200--Sobic002G418600 Sobic006G119400 Sobic006G119400 Sobic003G193200--Sobic006G119400 Sobic010G100800 Sobic010G100800 Sobic003G193200--Sobic010G100800 Sobic009G052700 Sobic009G052700 Sobic003G193200--Sobic009G052700 Sobic001G501300 Sobic001G501300 Sobic003G193200--Sobic001G501300 Sobic005G026000 Sobic005G026000 Sobic003G193200--Sobic005G026000 Sobic003G193200--Sobic001G124100 Sobic002G031700 Sobic002G031700 Sobic003G193200--Sobic002G031700 Sobic003G190100 Sobic003G190100 Sobic002G173100--Sobic003G190100 Sobic002G173100--Sobic003G108900 Sobic002G173100--Sobic003G203300 Sobic002G173100--Sobic001G060500 Sobic002G173100--Sobic003G190000 Sobic005G075100 Sobic005G075100 Sobic002G173100--Sobic005G075100 Sobic004G271600 Sobic004G271600 Sobic002G173100--Sobic004G271600 Sobic005G179300 Sobic005G179300 Sobic002G173100--Sobic005G179300 Sobic004G300000 Sobic004G300000 Sobic002G173100--Sobic004G300000 Sobic010G143800 Sobic010G143800 Sobic001G081200--Sobic010G143800 Sobic001G081200--Sobic004G178500 Sobic002G064750 Sobic002G064750 Sobic001G081200--Sobic002G064750 Sobic001G191600 Sobic001G191600 Sobic001G081200--Sobic001G191600 Sobic001G222250 Sobic001G222250 Sobic001G081200--Sobic001G222250 Sobic002G031400 Sobic002G031400 Sobic001G081200--Sobic002G031400 Sobic004G181700 Sobic004G181700 Sobic001G081200--Sobic004G181700 Sobic006G145200 Sobic006G145200 Sobic001G081200--Sobic006G145200 Sobic003G217700 Sobic003G217700 Sobic001G081200--Sobic003G217700 Sobic003G190000--Sobic001G060500 Sobic003G190000--Sobic002G073200 Sobic003G190000--Sobic002G173100 Sobic003G190000--Sobic010G197000 Sobic003G190000--Sobic003G203300 Sobic009G014100 Sobic009G014100 Sobic003G190000--Sobic009G014100 Sobic003G190000--Sobic005G075100 Sobic005G142800 Sobic005G142800 Sobic003G190000--Sobic005G142800 Sobic003G190000--Sobic001G219700 Sobic007G185700 Sobic007G185700 Sobic003G290800--Sobic007G185700 Sobic003G290800--Sobic002G118200 Sobic001G261573 Sobic001G261573 Sobic003G290800--Sobic001G261573 Sobic003G290800--Sobic005G118400 Sobic001G530900 Sobic001G530900 Sobic003G290800--Sobic001G530900 Sobic010G153201 Sobic010G153201 Sobic003G290800--Sobic010G153201 Sobic002G231200 Sobic002G231200 Sobic003G290800--Sobic002G231200 Sobic003G290800--Sobic003G434800 Sobic003G146500 Sobic003G146500 Sobic003G290800--Sobic003G146500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.