Gene annotation
Transcriptome id Sobic.006G176800.2,Sobic.006G176800.3,Sobic.006G176800.1,Sobic.006G176800.4
Synonym Sb06g025160, EMB71, YDA, MAPKKK4
Functional annotation "OsMKKK10(Ortholog in rice:Gou et al., 2018)" (PubMedID : 31659898)
STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
UniProt A0A1Z5RF51 , C5YDX3
Pfam PF00069 PF14531
Panther DB PTHR24361 PTHR24361:SF253
NCBI CDD KOG0198; MEKK and related serine/threonine protein kinases
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G63700 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os04g47240.2,LOC_Os04g47240.3 : STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
MaizeGDB (Corn) Zm00025a010230
Brachypodium KQJ84015 , KQK00715
Barley HORVU6Hr1G064150.1 , HORVU6Hr1G064150.2 , HORVU6Hr1G064150.3 , HORVU6Hr1G064150.4 , HORVU6Hr1G064150.5 , HORVU6Hr1G064150.8 , HORVU6Hr1G064150.6 , HORVU6Hr1G064150.7 , HORVU6Hr1G064150.9 , HORVU6Hr1G064150.12 , HORVU6Hr1G064150.13 , HORVU6Hr1G064150.10 , HORVU6Hr1G064150.11 , HORVU6Hr1G064150.16 , HORVU6Hr1G064150.17 , HORVU6Hr1G064150.14 , HORVU6Hr1G064150.15 , HORVU2Hr1G096350.7 , HORVU2Hr1G096350.6 , HORVU2Hr1G096350.5 , HORVU2Hr1G096350.4 , HORVU2Hr1G096350.3 , HORVU2Hr1G096350.2 , HORVU2Hr1G096350.1 , HORVU2Hr1G096350.9 , HORVU2Hr1G096350.8 , HORVU1Hr1G058600.1 , HORVU2Hr1G096350.10
Wheat TraesCS2D02G404700 , TraesCS2A02G407600 , TraesCS2B02G425500 , TraesCS2B02G425500
Populus -


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cDNA sequences
Sobic.006G176800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G062800 SET domain containing protein, expressed -
2 Sobic.002G397500 SAC3/GANP family protein, expressed -
3 Sobic.001G400500 calpain, putative, expressed -
4 Sobic.001G540400 expressed protein -
5 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
6 Sobic.005G028600 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.001G196500 plus-3 domain containing protein, putative, expressed -
8 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
9 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
10 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
11 Sobic.002G370200 agenet domain-containing protein, putative, expressed -
12 Sobic.001G037100 expressed protein K19026: spatacsin
13 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
14 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
15 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1
16 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
18 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
19 Sobic.003G247300 protein of unknown function DUF1296 domain containing protein, expressed -
20 Sobic.003G422500 expressed protein -


Gene co-expression network
sample Sobic006G176800 Sobic006G176800 Sobic007G062800 Sobic007G062800 Sobic006G176800--Sobic007G062800 Sobic002G397500 Sobic002G397500 Sobic006G176800--Sobic002G397500 Sobic001G400500 Sobic001G400500 Sobic006G176800--Sobic001G400500 Sobic001G540400 Sobic001G540400 Sobic006G176800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic006G176800--Sobic005G112300 Sobic005G028600 Sobic005G028600 Sobic006G176800--Sobic005G028600 Sobic001G196500 Sobic001G196500 Sobic006G176800--Sobic001G196500 Sobic010G112100 Sobic010G112100 Sobic006G176800--Sobic010G112100 Sobic003G408600 Sobic003G408600 Sobic006G176800--Sobic003G408600 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic010G010700 Sobic010G010700 Sobic007G062800--Sobic010G010700 Sobic004G242400 Sobic004G242400 Sobic007G062800--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic007G062800--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic007G062800--Sobic004G276400 Sobic007G062800--Sobic002G397500 Sobic002G397500--Sobic003G408600 Sobic002G397500--Sobic007G062800 Sobic002G397500--Sobic005G112300 Sobic002G397500--Sobic001G540400 Sobic009G109200 Sobic009G109200 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic002G397500--Sobic004G242400 Sobic002G397500--Sobic004G276400 Sobic002G397500--Sobic010G112100 Sobic001G542400 Sobic001G542400 Sobic001G400500--Sobic001G542400 Sobic001G400500--Sobic009G109200 Sobic001G400500--Sobic010G112100 Sobic005G008800 Sobic005G008800 Sobic001G400500--Sobic005G008800 Sobic001G063700 Sobic001G063700 Sobic001G400500--Sobic001G063700 Sobic009G256300 Sobic009G256300 Sobic001G400500--Sobic009G256300 Sobic010G105200 Sobic010G105200 Sobic001G400500--Sobic010G105200 Sobic001G400500--Sobic001G540400 Sobic001G400500--Sobic003G408600 Sobic001G289600 Sobic001G289600 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic003G422500 Sobic003G422500 Sobic001G540400--Sobic003G422500 Sobic001G540400--Sobic002G397500 Sobic001G540400--Sobic010G112100 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic001G058700 Sobic001G058700 Sobic005G028600--Sobic001G058700 Sobic003G247300 Sobic003G247300 Sobic005G028600--Sobic003G247300 Sobic005G028600--Sobic002G397500 Sobic001G299700 Sobic001G299700 Sobic005G028600--Sobic001G299700 Sobic005G028600--Sobic003G408600 Sobic005G001000 Sobic005G001000 Sobic005G028600--Sobic005G001000 Sobic001G280900 Sobic001G280900 Sobic005G028600--Sobic001G280900 Sobic005G028600--Sobic007G062800 Sobic005G028600--Sobic005G008800 Sobic003G229500 Sobic003G229500 Sobic001G196500--Sobic003G229500 Sobic002G299700 Sobic002G299700 Sobic001G196500--Sobic002G299700 Sobic010G275500 Sobic010G275500 Sobic001G196500--Sobic010G275500 Sobic008G132600 Sobic008G132600 Sobic001G196500--Sobic008G132600 Sobic003G101400 Sobic003G101400 Sobic001G196500--Sobic003G101400 Sobic001G196500--Sobic001G540400 Sobic001G196500--Sobic003G408600 Sobic001G196500--Sobic002G397500 Sobic001G457900 Sobic001G457900 Sobic001G196500--Sobic001G457900 Sobic003G360400 Sobic003G360400 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic001G433800 Sobic001G433800 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic003G408600--Sobic002G397500 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic003G408600--Sobic001G058700 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600
Octagon: transcription factors


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