Gene annotation
Transcriptome id Sobic.009G210000.3,Sobic.009G210000.2,Sobic.009G210000.1
Synonym Sb09g026620, CLPX
Functional annotation ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
UniProt A0A1B6P9X3 , A0A1Z5R4Q0 , A0A1Z5R3M0
Pfam PF10431 PF00004 PF10431 PF07724
Panther DB PTHR11262 PTHR11262:SF13
NCBI CDD KOG0745; Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily)
KEGG Orthology K03544; clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G53350 : CLP protease regulatory subunit X
RAP-DB (Rice) LOC_Os05g45750.1 : ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
MaizeGDB (Corn) Zm00025a044249
Brachypodium KQK05220 , KQK05221 , PNT70829 , PNT70828
Barley HORVU1Hr1G080910.9 , HORVU1Hr1G080910.8 , HORVU1Hr1G080910.1 , HORVU1Hr1G080910.3 , HORVU1Hr1G080910.2 , HORVU1Hr1G080910.5 , HORVU1Hr1G080910.7 , HORVU1Hr1G080910.6 , HORVU1Hr1G080910.15 , HORVU1Hr1G080910.16 , HORVU1Hr1G080910.11 , HORVU1Hr1G080910.10 , HORVU1Hr1G080910.13 , HORVU1Hr1G080910.12
Wheat TraesCS1D02G357300 , TraesCS1D02G357300 , TraesCS1D02G357300 , TraesCS1A02G352700 , TraesCS1A02G352700 , TraesCS1B02G369100 , TraesCS1B02G369100
Populus PNT07494 , PNT07495 , PNT07496 , PNT07493


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G184900 OsDegp8 - Putative Deg protease homologue, expressed -
2 Sobic.004G253050 - -
3 Sobic.007G116200 expressed protein K13217: PRPF39, pre-mRNA-processing factor 39
4 Sobic.003G262200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
5 Sobic.001G359900 expressed protein -
6 Sobic.004G359800 inositol-1-monophosphatase, putative, expressed -
7 Sobic.001G204000 expressed protein -
8 Sobic.010G219600 protein kinase domain containing protein, expressed -
9 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.006G092000 expressed protein K18172: COX assembly mitochondrial protein 2
11 Sobic.009G132700 - -
12 Sobic.003G247500 expressed protein -
13 Sobic.010G256700 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
14 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
15 Sobic.003G161000 powdery mildew resistance protein PM3F, putative, expressed -
16 Sobic.003G110800 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
17 Sobic.010G219900 expressed protein -
18 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
19 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
20 Sobic.010G032900 transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase


Gene co-expression network
sample Sobic009G210000 Sobic009G210000 Sobic009G184900 Sobic009G184900 Sobic009G210000--Sobic009G184900 Sobic004G253050 Sobic004G253050 Sobic009G210000--Sobic004G253050 Sobic007G116200 Sobic007G116200 Sobic009G210000--Sobic007G116200 Sobic003G262200 Sobic003G262200 Sobic009G210000--Sobic003G262200 Sobic001G359900 Sobic001G359900 Sobic009G210000--Sobic001G359900 Sobic004G359800 Sobic004G359800 Sobic009G210000--Sobic004G359800 Sobic001G204000 Sobic001G204000 Sobic009G210000--Sobic001G204000 Sobic010G219600 Sobic010G219600 Sobic009G210000--Sobic010G219600 Sobic005G149200 Sobic005G149200 Sobic009G210000--Sobic005G149200 Sobic009G184900--Sobic009G210000 Sobic007G020500 Sobic007G020500 Sobic009G184900--Sobic007G020500 Sobic005G086250 Sobic005G086250 Sobic009G184900--Sobic005G086250 Sobic009G184900--Sobic001G359900 Sobic003G334200 Sobic003G334200 Sobic009G184900--Sobic003G334200 Sobic003G290800 Sobic003G290800 Sobic009G184900--Sobic003G290800 Sobic007G202900 Sobic007G202900 Sobic009G184900--Sobic007G202900 Sobic009G008400 Sobic009G008400 Sobic009G184900--Sobic009G008400 Sobic009G184900--Sobic007G116200 Sobic006G092000 Sobic006G092000 Sobic004G253050--Sobic006G092000 Sobic004G253050--Sobic003G262200 Sobic008G115900 Sobic008G115900 Sobic004G253050--Sobic008G115900 Sobic001G270900 Sobic001G270900 Sobic004G253050--Sobic001G270900 Sobic003G229300 Sobic003G229300 Sobic004G253050--Sobic003G229300 Sobic006G050700 Sobic006G050700 Sobic004G253050--Sobic006G050700 Sobic003G138500 Sobic003G138500 Sobic004G253050--Sobic003G138500 Sobic003G247500 Sobic003G247500 Sobic004G253050--Sobic003G247500 Sobic007G123500 Sobic007G123500 Sobic004G253050--Sobic007G123500 Sobic006G216800 Sobic006G216800 Sobic007G116200--Sobic006G216800 Sobic010G010700 Sobic010G010700 Sobic007G116200--Sobic010G010700 Sobic002G134200 Sobic002G134200 Sobic007G116200--Sobic002G134200 Sobic006G182900 Sobic006G182900 Sobic007G116200--Sobic006G182900 Sobic007G116200--Sobic004G359800 Sobic010G139000 Sobic010G139000 Sobic007G116200--Sobic010G139000 Sobic010G256700 Sobic010G256700 Sobic007G116200--Sobic010G256700 Sobic004G209600 Sobic004G209600 Sobic007G116200--Sobic004G209600 Sobic003G280800 Sobic003G280800 Sobic007G116200--Sobic003G280800 Sobic003G262200--Sobic003G229300 Sobic006G185100 Sobic006G185100 Sobic003G262200--Sobic006G185100 Sobic004G193700 Sobic004G193700 Sobic003G262200--Sobic004G193700 Sobic003G119600 Sobic003G119600 Sobic003G262200--Sobic003G119600 Sobic003G262200--Sobic008G115900 Sobic002G091600 Sobic002G091600 Sobic003G262200--Sobic002G091600 Sobic003G253600 Sobic003G253600 Sobic003G262200--Sobic003G253600 Sobic003G155100 Sobic003G155100 Sobic003G262200--Sobic003G155100 Sobic001G355800 Sobic001G355800 Sobic003G262200--Sobic001G355800 Sobic010G277500 Sobic010G277500 Sobic001G359900--Sobic010G277500 Sobic003G161000 Sobic003G161000 Sobic001G359900--Sobic003G161000 Sobic003G332800 Sobic003G332800 Sobic001G359900--Sobic003G332800 Sobic010G129200 Sobic010G129200 Sobic001G359900--Sobic010G129200 Sobic003G176500 Sobic003G176500 Sobic001G359900--Sobic003G176500 Sobic005G013200 Sobic005G013200 Sobic001G359900--Sobic005G013200 Sobic006G079400 Sobic006G079400 Sobic001G359900--Sobic006G079400 Sobic004G299000 Sobic004G299000 Sobic001G359900--Sobic004G299000 Sobic003G174475 Sobic003G174475 Sobic001G359900--Sobic003G174475 Sobic004G359800--Sobic007G116200 Sobic002G169633 Sobic002G169633 Sobic004G359800--Sobic002G169633 Sobic004G359800--Sobic003G138500 Sobic004G359800--Sobic002G134200 Sobic004G359800--Sobic003G280800 Sobic004G359800--Sobic010G139000 Sobic004G359800--Sobic006G182900 Sobic010G176550 Sobic010G176550 Sobic004G359800--Sobic010G176550 Sobic002G127550 Sobic002G127550 Sobic004G359800--Sobic002G127550 Sobic001G083400 Sobic001G083400 Sobic001G204000--Sobic001G083400 Sobic001G204000--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic001G204000--Sobic001G365900 Sobic001G204000--Sobic002G134200 Sobic002G133400 Sobic002G133400 Sobic001G204000--Sobic002G133400 Sobic005G014300 Sobic005G014300 Sobic001G204000--Sobic005G014300 Sobic003G389200 Sobic003G389200 Sobic001G204000--Sobic003G389200 Sobic002G309600 Sobic002G309600 Sobic001G204000--Sobic002G309600 Sobic001G289600 Sobic001G289600 Sobic001G204000--Sobic001G289600 Sobic004G356400 Sobic004G356400 Sobic010G219600--Sobic004G356400 Sobic005G101200 Sobic005G101200 Sobic010G219600--Sobic005G101200 Sobic008G130000 Sobic008G130000 Sobic010G219600--Sobic008G130000 Sobic006G093800 Sobic006G093800 Sobic010G219600--Sobic006G093800 Sobic010G251700 Sobic010G251700 Sobic010G219600--Sobic010G251700 Sobic010G085100 Sobic010G085100 Sobic010G219600--Sobic010G085100 Sobic003G021100 Sobic003G021100 Sobic010G219600--Sobic003G021100 Sobic004G347800 Sobic004G347800 Sobic010G219600--Sobic004G347800 Sobic004G027600 Sobic004G027600 Sobic010G219600--Sobic004G027600 Sobic001G375100 Sobic001G375100 Sobic005G149200--Sobic001G375100 Sobic006G219600 Sobic006G219600 Sobic005G149200--Sobic006G219600 Sobic001G454500 Sobic001G454500 Sobic005G149200--Sobic001G454500 Sobic006G133900 Sobic006G133900 Sobic005G149200--Sobic006G133900 Sobic003G301900 Sobic003G301900 Sobic005G149200--Sobic003G301900 Sobic001G517800 Sobic001G517800 Sobic005G149200--Sobic001G517800 Sobic001G333800 Sobic001G333800 Sobic005G149200--Sobic001G333800 Sobic007G090403 Sobic007G090403 Sobic005G149200--Sobic007G090403 Sobic005G149200--Sobic003G155100
Octagon: transcription factors


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