Gene annotation
Transcriptome id Sobic.010G219900.1
Synonym
Functional annotation expressed protein
UniProt C5Z7M4
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53645 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os06g45390.1 : expressed protein
MaizeGDB (Corn) Zm00025a008531
Brachypodium KQK16994 , KQK16995 , KQK16996 , PNT75405
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G158900 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
2 Sobic.009G143500 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
3 Sobic.003G146500 red chlorophyll catabolite reductase, putative, expressed K13545: RCCR, red chlorophyll catabolite reductase
4 Sobic.008G094000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
5 Sobic.005G188600 - -
6 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
7 Sobic.004G354200 expressed protein -
8 Sobic.005G144300 phospholipase, patatin family, putative, expressed -
9 Sobic.003G290800 starch binding domain containing protein, putative, expressed -
10 Sobic.001G270900 expressed protein -
11 Sobic.001G100100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@GATA transcription factor 25, putative, expressed -
12 Sobic.001G003200 RNApolymerase sigma-subunit F(PubMedID : 26465154)@RNA polymerase sigma factor, putative, expressed K03086: RNA polymerase primary sigma factor
13 Sobic.004G121400 CAX 1c(PubMedID : 22196357)@cation exchanger 3(PubMedID : 26320239)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
14 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
15 Sobic.009G210000 ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
16 Sobic.006G186500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed -
17 Sobic.002G331100 peptide chain release factor protein, putative, expressed K02836: peptide chain release factor 2
18 Sobic.001G098301 - -
19 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1
20 Sobic.004G001300 -(PubMedID : 26976818)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15893: glycerate dehydrogenase


Gene co-expression network
sample Sobic010G219900 Sobic010G219900 Sobic001G158900 Sobic001G158900 Sobic010G219900--Sobic001G158900 Sobic009G143500 Sobic009G143500 Sobic010G219900--Sobic009G143500 Sobic003G146500 Sobic003G146500 Sobic010G219900--Sobic003G146500 Sobic008G094000 Sobic008G094000 Sobic010G219900--Sobic008G094000 Sobic005G188600 Sobic005G188600 Sobic010G219900--Sobic005G188600 Sobic001G065600 Sobic001G065600 Sobic010G219900--Sobic001G065600 Sobic004G354200 Sobic004G354200 Sobic010G219900--Sobic004G354200 Sobic005G144300 Sobic005G144300 Sobic010G219900--Sobic005G144300 Sobic003G290800 Sobic003G290800 Sobic010G219900--Sobic003G290800 Sobic001G158900--Sobic001G065600 Sobic002G036000 Sobic002G036000 Sobic001G158900--Sobic002G036000 Sobic001G158900--Sobic005G188600 Sobic001G003200 Sobic001G003200 Sobic001G158900--Sobic001G003200 Sobic006G188000 Sobic006G188000 Sobic001G158900--Sobic006G188000 Sobic006G010900 Sobic006G010900 Sobic001G158900--Sobic006G010900 Sobic008G117000 Sobic008G117000 Sobic001G158900--Sobic008G117000 Sobic005G101300 Sobic005G101300 Sobic001G158900--Sobic005G101300 Sobic002G403600 Sobic002G403600 Sobic001G158900--Sobic002G403600 Sobic006G186500 Sobic006G186500 Sobic009G143500--Sobic006G186500 Sobic007G015500 Sobic007G015500 Sobic009G143500--Sobic007G015500 Sobic009G143500--Sobic001G003200 Sobic009G207900 Sobic009G207900 Sobic009G143500--Sobic009G207900 Sobic003G014300 Sobic003G014300 Sobic009G143500--Sobic003G014300 Sobic003G343500 Sobic003G343500 Sobic009G143500--Sobic003G343500 Sobic005G110532 Sobic005G110532 Sobic009G143500--Sobic005G110532 Sobic006G258700 Sobic006G258700 Sobic009G143500--Sobic006G258700 Sobic009G143500--Sobic008G094000 Sobic002G118200 Sobic002G118200 Sobic003G146500--Sobic002G118200 Sobic001G531500 Sobic001G531500 Sobic003G146500--Sobic001G531500 Sobic004G070500 Sobic004G070500 Sobic003G146500--Sobic004G070500 Sobic007G090403 Sobic007G090403 Sobic003G146500--Sobic007G090403 Sobic001G512500 Sobic001G512500 Sobic003G146500--Sobic001G512500 Sobic006G133900 Sobic006G133900 Sobic003G146500--Sobic006G133900 Sobic009G123900 Sobic009G123900 Sobic003G146500--Sobic009G123900 Sobic005G118400 Sobic005G118400 Sobic003G146500--Sobic005G118400 Sobic009G093100 Sobic009G093100 Sobic003G146500--Sobic009G093100 Sobic008G094000--Sobic001G065600 Sobic008G094000--Sobic001G003200 Sobic001G073900 Sobic001G073900 Sobic008G094000--Sobic001G073900 Sobic008G094000--Sobic003G343500 Sobic010G067100 Sobic010G067100 Sobic008G094000--Sobic010G067100 Sobic010G099700 Sobic010G099700 Sobic008G094000--Sobic010G099700 Sobic008G094000--Sobic006G133900 Sobic008G115900 Sobic008G115900 Sobic008G094000--Sobic008G115900 Sobic003G442700 Sobic003G442700 Sobic008G094000--Sobic003G442700 Sobic005G188600--Sobic001G065600 Sobic005G188600--Sobic001G158900 Sobic005G188600--Sobic006G188000 Sobic003G443500 Sobic003G443500 Sobic005G188600--Sobic003G443500 Sobic006G114900 Sobic006G114900 Sobic005G188600--Sobic006G114900 Sobic006G101500 Sobic006G101500 Sobic005G188600--Sobic006G101500 Sobic005G188600--Sobic008G115900 Sobic001G098301 Sobic001G098301 Sobic005G188600--Sobic001G098301 Sobic006G160400 Sobic006G160400 Sobic005G188600--Sobic006G160400 Sobic001G065600--Sobic001G158900 Sobic001G065600--Sobic001G073900 Sobic001G065600--Sobic005G188600 Sobic001G065600--Sobic006G010900 Sobic001G065600--Sobic008G094000 Sobic001G484400 Sobic001G484400 Sobic001G065600--Sobic001G484400 Sobic001G065600--Sobic002G036000 Sobic001G065600--Sobic001G003200 Sobic003G003600 Sobic003G003600 Sobic001G065600--Sobic003G003600 Sobic004G034800 Sobic004G034800 Sobic004G354200--Sobic004G034800 Sobic008G011200 Sobic008G011200 Sobic004G354200--Sobic008G011200 Sobic010G176550 Sobic010G176550 Sobic004G354200--Sobic010G176550 Sobic002G127550 Sobic002G127550 Sobic004G354200--Sobic002G127550 Sobic006G030400 Sobic006G030400 Sobic004G354200--Sobic006G030400 Sobic001G433000 Sobic001G433000 Sobic004G354200--Sobic001G433000 Sobic004G120100 Sobic004G120100 Sobic004G354200--Sobic004G120100 Sobic003G381200 Sobic003G381200 Sobic004G354200--Sobic003G381200 Sobic007G185700 Sobic007G185700 Sobic004G354200--Sobic007G185700 Sobic003G342100 Sobic003G342100 Sobic005G144300--Sobic003G342100 Sobic005G144300--Sobic001G073900 Sobic005G144300--Sobic008G094000 Sobic002G231200 Sobic002G231200 Sobic005G144300--Sobic002G231200 Sobic005G144300--Sobic003G343500 Sobic005G144300--Sobic003G146500 Sobic005G144300--Sobic001G065600 Sobic001G062900 Sobic001G062900 Sobic005G144300--Sobic001G062900 Sobic008G001900 Sobic008G001900 Sobic005G144300--Sobic008G001900 Sobic003G290800--Sobic007G185700 Sobic003G290800--Sobic002G118200 Sobic001G261573 Sobic001G261573 Sobic003G290800--Sobic001G261573 Sobic003G290800--Sobic005G118400 Sobic001G530900 Sobic001G530900 Sobic003G290800--Sobic001G530900 Sobic010G153201 Sobic010G153201 Sobic003G290800--Sobic010G153201 Sobic003G290800--Sobic002G231200 Sobic003G434800 Sobic003G434800 Sobic003G290800--Sobic003G434800 Sobic003G290800--Sobic003G146500
Octagon: transcription factors


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