Gene annotation
Transcriptome id Sobic.009G184600.2
Synonym Sb09g024420
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A1Z5R473
Pfam -
Panther DB PTHR36886
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33835 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os05g41790.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a037865 , Zm00025a044111
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G184600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G012100 expressed protein K18735: protein SMG9
2 Sobic.005G180900 DUF630/DUF632 domains containing protein, putative, expressed -
3 Sobic.006G177200 amine oxidase, putative, expressed K11450: KDM1A, AOF2, [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
4 Sobic.003G309050 - -
5 Sobic.001G097200 phosphatidylinositol kinase, putative, expressed K08873: serine/threonine-protein kinase SMG1
6 Sobic.006G176800 "OsMKKK10(Ortholog in rice:Gou et al., 2018)"(PubMedID : 31659898)@STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
7 Sobic.001G491700 PPR repeat domain containing protein, putative, expressed -
8 Sobic.004G010200 expressed protein -
9 Sobic.004G342300 expressed protein -
10 Sobic.004G163000 expressed protein K15505: DNA repair protein RAD5
11 Sobic.008G088866 - -
12 Sobic.001G543200 expressed protein -
13 Sobic.004G332600 OsFBL15 - F-box domain and LRR containing protein, expressed K10268: F-box and leucine-rich repeat protein 2/20
14 Sobic.010G202900 expressed protein -
15 Sobic.007G202000 pumilio domain-containing protein PPD1, putative, expressed -
16 Sobic.010G248100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ATEXO70G1, putative, expressed K07195: EXOC7, exocyst complex component 7
17 Sobic.001G440300 pentatricopeptide, putative, expressed -
18 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
19 Sobic.005G024600 Rf1, mitochondrial precursor, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
20 Sobic.009G259900 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C


Gene co-expression network
sample Sobic009G184600 Sobic009G184600 Sobic010G012100 Sobic010G012100 Sobic009G184600--Sobic010G012100 Sobic005G180900 Sobic005G180900 Sobic009G184600--Sobic005G180900 Sobic006G177200 Sobic006G177200 Sobic009G184600--Sobic006G177200 Sobic003G309050 Sobic003G309050 Sobic009G184600--Sobic003G309050 Sobic001G097200 Sobic001G097200 Sobic009G184600--Sobic001G097200 Sobic006G176800 Sobic006G176800 Sobic009G184600--Sobic006G176800 Sobic001G491700 Sobic001G491700 Sobic009G184600--Sobic001G491700 Sobic004G010200 Sobic004G010200 Sobic009G184600--Sobic004G010200 Sobic004G342300 Sobic004G342300 Sobic009G184600--Sobic004G342300 Sobic010G012100--Sobic009G184600 Sobic003G037700 Sobic003G037700 Sobic010G012100--Sobic003G037700 Sobic006G116100 Sobic006G116100 Sobic010G012100--Sobic006G116100 Sobic010G012100--Sobic006G177200 Sobic003G160000 Sobic003G160000 Sobic010G012100--Sobic003G160000 Sobic002G114000 Sobic002G114000 Sobic010G012100--Sobic002G114000 Sobic004G099800 Sobic004G099800 Sobic010G012100--Sobic004G099800 Sobic010G012100--Sobic006G176800 Sobic006G248500 Sobic006G248500 Sobic010G012100--Sobic006G248500 Sobic010G026100 Sobic010G026100 Sobic005G180900--Sobic010G026100 Sobic009G259900 Sobic009G259900 Sobic005G180900--Sobic009G259900 Sobic005G180900--Sobic009G184600 Sobic007G125700 Sobic007G125700 Sobic005G180900--Sobic007G125700 Sobic002G430900 Sobic002G430900 Sobic005G180900--Sobic002G430900 Sobic005G013300 Sobic005G013300 Sobic005G180900--Sobic005G013300 Sobic001G395200 Sobic001G395200 Sobic005G180900--Sobic001G395200 Sobic005G180900--Sobic004G342300 Sobic010G149600 Sobic010G149600 Sobic005G180900--Sobic010G149600 Sobic001G313400 Sobic001G313400 Sobic006G177200--Sobic001G313400 Sobic002G400800 Sobic002G400800 Sobic006G177200--Sobic002G400800 Sobic002G340000 Sobic002G340000 Sobic006G177200--Sobic002G340000 Sobic008G054600 Sobic008G054600 Sobic006G177200--Sobic008G054600 Sobic004G357100 Sobic004G357100 Sobic006G177200--Sobic004G357100 Sobic009G260650 Sobic009G260650 Sobic006G177200--Sobic009G260650 Sobic002G263700 Sobic002G263700 Sobic006G177200--Sobic002G263700 Sobic004G122900 Sobic004G122900 Sobic006G177200--Sobic004G122900 Sobic003G182300 Sobic003G182300 Sobic006G177200--Sobic003G182300 Sobic001G451300 Sobic001G451300 Sobic003G309050--Sobic001G451300 Sobic001G393900 Sobic001G393900 Sobic003G309050--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic003G309050--Sobic002G043100 Sobic002G399800 Sobic002G399800 Sobic003G309050--Sobic002G399800 Sobic002G371600 Sobic002G371600 Sobic003G309050--Sobic002G371600 Sobic006G245900 Sobic006G245900 Sobic003G309050--Sobic006G245900 Sobic001G417500 Sobic001G417500 Sobic003G309050--Sobic001G417500 Sobic003G260400 Sobic003G260400 Sobic003G309050--Sobic003G260400 Sobic010G262100 Sobic010G262100 Sobic003G309050--Sobic010G262100 Sobic001G097200--Sobic006G176800 Sobic007G098500 Sobic007G098500 Sobic001G097200--Sobic007G098500 Sobic010G105200 Sobic010G105200 Sobic001G097200--Sobic010G105200 Sobic002G396500 Sobic002G396500 Sobic001G097200--Sobic002G396500 Sobic004G276400 Sobic004G276400 Sobic001G097200--Sobic004G276400 Sobic004G248600 Sobic004G248600 Sobic001G097200--Sobic004G248600 Sobic003G233400 Sobic003G233400 Sobic001G097200--Sobic003G233400 Sobic004G023100 Sobic004G023100 Sobic001G097200--Sobic004G023100 Sobic008G085300 Sobic008G085300 Sobic001G097200--Sobic008G085300 Sobic007G062800 Sobic007G062800 Sobic006G176800--Sobic007G062800 Sobic002G397500 Sobic002G397500 Sobic006G176800--Sobic002G397500 Sobic001G400500 Sobic001G400500 Sobic006G176800--Sobic001G400500 Sobic001G540400 Sobic001G540400 Sobic006G176800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic006G176800--Sobic005G112300 Sobic005G028600 Sobic005G028600 Sobic006G176800--Sobic005G028600 Sobic001G196500 Sobic001G196500 Sobic006G176800--Sobic001G196500 Sobic010G112100 Sobic010G112100 Sobic006G176800--Sobic010G112100 Sobic003G408600 Sobic003G408600 Sobic006G176800--Sobic003G408600 Sobic009G096566 Sobic009G096566 Sobic001G491700--Sobic009G096566 Sobic004G349500 Sobic004G349500 Sobic001G491700--Sobic004G349500 Sobic004G351932 Sobic004G351932 Sobic001G491700--Sobic004G351932 Sobic006G084701 Sobic006G084701 Sobic001G491700--Sobic006G084701 Sobic002G358900 Sobic002G358900 Sobic001G491700--Sobic002G358900 Sobic002G105501 Sobic002G105501 Sobic001G491700--Sobic002G105501 Sobic001G005400 Sobic001G005400 Sobic001G491700--Sobic001G005400 Sobic007G220066 Sobic007G220066 Sobic001G491700--Sobic007G220066 Sobic004G051500 Sobic004G051500 Sobic001G491700--Sobic004G051500 Sobic003G217200 Sobic003G217200 Sobic004G010200--Sobic003G217200 Sobic010G027900 Sobic010G027900 Sobic004G010200--Sobic010G027900 Sobic010G057500 Sobic010G057500 Sobic004G010200--Sobic010G057500 Sobic004G010200--Sobic003G309050 Sobic002G105700 Sobic002G105700 Sobic004G010200--Sobic002G105700 Sobic003G388000 Sobic003G388000 Sobic004G010200--Sobic003G388000 Sobic001G286500 Sobic001G286500 Sobic004G010200--Sobic001G286500 Sobic002G374300 Sobic002G374300 Sobic004G010200--Sobic002G374300 Sobic004G010200--Sobic002G371600 Sobic004G354000 Sobic004G354000 Sobic004G342300--Sobic004G354000 Sobic004G038100 Sobic004G038100 Sobic004G342300--Sobic004G038100 Sobic003G360300 Sobic003G360300 Sobic004G342300--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic004G342300--Sobic008G080500 Sobic010G032300 Sobic010G032300 Sobic004G342300--Sobic010G032300 Sobic006G208400 Sobic006G208400 Sobic004G342300--Sobic006G208400 Sobic004G342300--Sobic010G262100 Sobic006G181800 Sobic006G181800 Sobic004G342300--Sobic006G181800 Sobic003G259600 Sobic003G259600 Sobic004G342300--Sobic003G259600
Octagon: transcription factors


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