Gene annotation
Transcriptome id Sobic.004G163000.1
Synonym RAD5, Sb04g021470
Functional annotation expressed protein
UniProt C5XTC7
Pfam PF13920 PF08797 PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF779
NCBI CDD -
KEGG Orthology K15505; DNA repair protein RAD5
Gene Ontology GO:0016818; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0008270zinc ion binding GO:0003676nucleic acid binding GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G22750 : DNA/RNA helicase protein
RAP-DB (Rice) LOC_Os02g32570.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a031457 , Zm00025a057742 , Zm00025a057743
Brachypodium KQJ99686 , KQJ99687 , KQJ99685
Barley HORVU2Hr1G052670.1
Wheat TraesCS6D02G107900 , TraesCS6A02G117900 , TraesCS6B02G146100 , TraesCS6B02G146100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G184600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
2 Sobic.010G202900 expressed protein -
3 Sobic.010G103000 expressed protein -
4 Sobic.010G012100 expressed protein K18735: protein SMG9
5 Sobic.001G524600 - -
6 Sobic.001G535000 - -
7 Sobic.003G399900 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
8 Sobic.006G053500 expressed protein K10990: RMI1, RecQ-mediated genome instability protein 1
9 Sobic.010G248100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ATEXO70G1, putative, expressed K07195: EXOC7, exocyst complex component 7
10 Sobic.002G141050 - -
11 Sobic.001G222550 - -
12 Sobic.008G130500 TKL_IRAK_DUF26-la.6 - DUF26 kinases have homology to DUF26 containing loci, expressed -
13 Sobic.005G029300 - -
14 Sobic.002G049200 PHD-finger domain containing protein, expressed -
15 Sobic.004G196900 - -
16 Sobic.003G316400 expressed protein -
17 Sobic.002G089300 LTPL54 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
18 Sobic.002G368000 6-phosphogluconolactonase, putative, expressed K01057: PGLS, pgl, 6-phosphogluconolactonase
19 Sobic.006G236100 - -
20 Sobic.008G153900 helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic004G163000 Sobic004G163000 Sobic009G184600 Sobic009G184600 Sobic004G163000--Sobic009G184600 Sobic010G202900 Sobic010G202900 Sobic004G163000--Sobic010G202900 Sobic010G103000 Sobic010G103000 Sobic004G163000--Sobic010G103000 Sobic010G012100 Sobic010G012100 Sobic004G163000--Sobic010G012100 Sobic001G524600 Sobic001G524600 Sobic004G163000--Sobic001G524600 Sobic001G535000 Sobic001G535000 Sobic004G163000--Sobic001G535000 Sobic003G399900 Sobic003G399900 Sobic004G163000--Sobic003G399900 Sobic006G053500 Sobic006G053500 Sobic004G163000--Sobic006G053500 Sobic010G248100 Sobic010G248100 Sobic004G163000--Sobic010G248100 Sobic009G184600--Sobic010G012100 Sobic005G180900 Sobic005G180900 Sobic009G184600--Sobic005G180900 Sobic006G177200 Sobic006G177200 Sobic009G184600--Sobic006G177200 Sobic003G309050 Sobic003G309050 Sobic009G184600--Sobic003G309050 Sobic001G097200 Sobic001G097200 Sobic009G184600--Sobic001G097200 Sobic006G176800 Sobic006G176800 Sobic009G184600--Sobic006G176800 Sobic001G491700 Sobic001G491700 Sobic009G184600--Sobic001G491700 Sobic004G010200 Sobic004G010200 Sobic009G184600--Sobic004G010200 Sobic004G342300 Sobic004G342300 Sobic009G184600--Sobic004G342300 Sobic010G202900--Sobic006G053500 Sobic010G202900--Sobic003G399900 Sobic004G338400 Sobic004G338400 Sobic010G202900--Sobic004G338400 Sobic010G202900--Sobic010G103000 Sobic010G091366 Sobic010G091366 Sobic010G202900--Sobic010G091366 Sobic003G429101 Sobic003G429101 Sobic010G202900--Sobic003G429101 Sobic006G236100 Sobic006G236100 Sobic010G202900--Sobic006G236100 Sobic007G075200 Sobic007G075200 Sobic010G202900--Sobic007G075200 Sobic003G422100 Sobic003G422100 Sobic010G202900--Sobic003G422100 Sobic010G103000--Sobic007G075200 Sobic006G261000 Sobic006G261000 Sobic010G103000--Sobic006G261000 Sobic002G213050 Sobic002G213050 Sobic010G103000--Sobic002G213050 Sobic001G528000 Sobic001G528000 Sobic010G103000--Sobic001G528000 Sobic004G078400 Sobic004G078400 Sobic010G103000--Sobic004G078400 Sobic003G049100 Sobic003G049100 Sobic010G103000--Sobic003G049100 Sobic003G188900 Sobic003G188900 Sobic010G103000--Sobic003G188900 Sobic010G103000--Sobic006G053500 Sobic005G199500 Sobic005G199500 Sobic010G103000--Sobic005G199500 Sobic010G012100--Sobic009G184600 Sobic003G037700 Sobic003G037700 Sobic010G012100--Sobic003G037700 Sobic006G116100 Sobic006G116100 Sobic010G012100--Sobic006G116100 Sobic010G012100--Sobic006G177200 Sobic003G160000 Sobic003G160000 Sobic010G012100--Sobic003G160000 Sobic002G114000 Sobic002G114000 Sobic010G012100--Sobic002G114000 Sobic004G099800 Sobic004G099800 Sobic010G012100--Sobic004G099800 Sobic010G012100--Sobic006G176800 Sobic006G248500 Sobic006G248500 Sobic010G012100--Sobic006G248500 Sobic001G524600--Sobic003G429101 Sobic003G046900 Sobic003G046900 Sobic001G524600--Sobic003G046900 Sobic006G278950 Sobic006G278950 Sobic001G524600--Sobic006G278950 Sobic006G159700 Sobic006G159700 Sobic001G524600--Sobic006G159700 Sobic002G143600 Sobic002G143600 Sobic001G524600--Sobic002G143600 Sobic010G212900 Sobic010G212900 Sobic001G524600--Sobic010G212900 Sobic003G005400 Sobic003G005400 Sobic001G524600--Sobic003G005400 Sobic003G242600 Sobic003G242600 Sobic001G524600--Sobic003G242600 Sobic004G196000 Sobic004G196000 Sobic001G524600--Sobic004G196000 Sobic001G535000--Sobic010G202900 Sobic001G535000--Sobic006G053500 Sobic001G535000--Sobic010G248100 Sobic005G008700 Sobic005G008700 Sobic001G535000--Sobic005G008700 Sobic005G082000 Sobic005G082000 Sobic001G535000--Sobic005G082000 Sobic001G535000--Sobic006G236100 Sobic001G535000--Sobic003G399900 Sobic004G289700 Sobic004G289700 Sobic001G535000--Sobic004G289700 Sobic002G264100 Sobic002G264100 Sobic001G535000--Sobic002G264100 Sobic003G399900--Sobic006G053500 Sobic003G399900--Sobic010G202900 Sobic005G110550 Sobic005G110550 Sobic003G399900--Sobic005G110550 Sobic002G279200 Sobic002G279200 Sobic003G399900--Sobic002G279200 Sobic003G316400 Sobic003G316400 Sobic003G399900--Sobic003G316400 Sobic003G399900--Sobic004G338400 Sobic003G399900--Sobic005G008700 Sobic003G399900--Sobic010G091366 Sobic008G072050 Sobic008G072050 Sobic003G399900--Sobic008G072050 Sobic003G034250 Sobic003G034250 Sobic006G053500--Sobic003G034250 Sobic008G154000 Sobic008G154000 Sobic006G053500--Sobic008G154000 Sobic003G091100 Sobic003G091100 Sobic006G053500--Sobic003G091100 Sobic010G229200 Sobic010G229200 Sobic006G053500--Sobic010G229200 Sobic001G218701 Sobic001G218701 Sobic006G053500--Sobic001G218701 Sobic007G024900 Sobic007G024900 Sobic006G053500--Sobic007G024900 Sobic007G100275 Sobic007G100275 Sobic006G053500--Sobic007G100275 Sobic003G058400 Sobic003G058400 Sobic006G053500--Sobic003G058400 SobicK042700 SobicK042700 Sobic006G053500--SobicK042700 Sobic002G368000 Sobic002G368000 Sobic010G248100--Sobic002G368000 Sobic004G041000 Sobic004G041000 Sobic010G248100--Sobic004G041000 Sobic003G049000 Sobic003G049000 Sobic010G248100--Sobic003G049000 Sobic003G303000 Sobic003G303000 Sobic010G248100--Sobic003G303000 Sobic010G248100--Sobic005G008700 Sobic010G058400 Sobic010G058400 Sobic010G248100--Sobic010G058400 Sobic004G196900 Sobic004G196900 Sobic010G248100--Sobic004G196900 Sobic002G141050 Sobic002G141050 Sobic010G248100--Sobic002G141050 Sobic002G089300 Sobic002G089300 Sobic010G248100--Sobic002G089300
Octagon: transcription factors


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