Gene annotation
Transcriptome id Sobic.010G012100.2,Sobic.010G012100.1,Sobic.010G012100.3
Synonym Sb10g001200
Functional annotation expressed protein
UniProt C5Z2T4 , A0A1W0VR15
Pfam -
Panther DB PTHR14270 PTHR14270:SF0
NCBI CDD -
KEGG Orthology K18735; protein SMG9
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g02430.1 : expressed protein
MaizeGDB (Corn) Zm00025a041193
Brachypodium KQK19793 , PNT76618
Barley HORVU7Hr1G007920.8 , HORVU7Hr1G007920.2 , HORVU7Hr1G007920.7 , HORVU7Hr1G007920.5 , HORVU7Hr1G007920.11 , HORVU7Hr1G007920.10
Wheat TraesCSU02G065100 , TraesCS7D02G038300 , TraesCS7A02G042700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G184600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
2 Sobic.003G037700 WD domain, G-beta repeat domain containing protein, expressed -
3 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
4 Sobic.006G177200 amine oxidase, putative, expressed K11450: KDM1A, AOF2, [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
5 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
6 Sobic.002G114000 GAGA-binding protein, putative, expressed -
7 Sobic.004G099800 expressed protein K14376: poly(A) polymerase
8 Sobic.006G176800 "OsMKKK10(Ortholog in rice:Gou et al., 2018)"(PubMedID : 31659898)@STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
9 Sobic.006G248500 expressed protein -
10 Sobic.002G400800 expressed protein -
11 Sobic.002G081100 KH domain containing protein, putative, expressed K14945: protein quaking
12 Sobic.008G113500 adaptor complexes medium subunit family protein, expressed K19023: AP5M1, AP-5 complex subunit mu-1
13 Sobic.008G153000 MATH domain containing protein, expressed -
14 Sobic.001G326600 OsFBX164 - F-box domain containing protein, expressed -
15 Sobic.001G010300 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.005G133500 expressed protein -
17 Sobic.005G180900 DUF630/DUF632 domains containing protein, putative, expressed -
18 Sobic.002G111600 expressed protein -
19 Sobic.009G151200 expressed protein -
20 Sobic.006G061000 pentatricopeptide repeat-containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G012100 Sobic010G012100 Sobic009G184600 Sobic009G184600 Sobic010G012100--Sobic009G184600 Sobic003G037700 Sobic003G037700 Sobic010G012100--Sobic003G037700 Sobic006G116100 Sobic006G116100 Sobic010G012100--Sobic006G116100 Sobic006G177200 Sobic006G177200 Sobic010G012100--Sobic006G177200 Sobic003G160000 Sobic003G160000 Sobic010G012100--Sobic003G160000 Sobic002G114000 Sobic002G114000 Sobic010G012100--Sobic002G114000 Sobic004G099800 Sobic004G099800 Sobic010G012100--Sobic004G099800 Sobic006G176800 Sobic006G176800 Sobic010G012100--Sobic006G176800 Sobic006G248500 Sobic006G248500 Sobic010G012100--Sobic006G248500 Sobic009G184600--Sobic010G012100 Sobic005G180900 Sobic005G180900 Sobic009G184600--Sobic005G180900 Sobic009G184600--Sobic006G177200 Sobic003G309050 Sobic003G309050 Sobic009G184600--Sobic003G309050 Sobic001G097200 Sobic001G097200 Sobic009G184600--Sobic001G097200 Sobic009G184600--Sobic006G176800 Sobic001G491700 Sobic001G491700 Sobic009G184600--Sobic001G491700 Sobic004G010200 Sobic004G010200 Sobic009G184600--Sobic004G010200 Sobic004G342300 Sobic004G342300 Sobic009G184600--Sobic004G342300 Sobic003G037700--Sobic006G116100 Sobic003G173950 Sobic003G173950 Sobic003G037700--Sobic003G173950 Sobic003G037700--Sobic003G160000 Sobic003G170100 Sobic003G170100 Sobic003G037700--Sobic003G170100 Sobic001G356500 Sobic001G356500 Sobic003G037700--Sobic001G356500 Sobic003G037700--Sobic004G099800 Sobic003G241200 Sobic003G241200 Sobic003G037700--Sobic003G241200 Sobic005G013200 Sobic005G013200 Sobic003G037700--Sobic005G013200 Sobic003G033200 Sobic003G033200 Sobic003G037700--Sobic003G033200 Sobic008G153000 Sobic008G153000 Sobic006G116100--Sobic008G153000 Sobic008G149800 Sobic008G149800 Sobic006G116100--Sobic008G149800 Sobic008G173100 Sobic008G173100 Sobic006G116100--Sobic008G173100 Sobic006G116100--Sobic003G160000 Sobic002G063900 Sobic002G063900 Sobic006G116100--Sobic002G063900 Sobic002G357700 Sobic002G357700 Sobic006G116100--Sobic002G357700 Sobic006G116100--Sobic003G241200 Sobic009G119000 Sobic009G119000 Sobic006G116100--Sobic009G119000 Sobic003G416700 Sobic003G416700 Sobic006G116100--Sobic003G416700 Sobic001G313400 Sobic001G313400 Sobic006G177200--Sobic001G313400 Sobic002G400800 Sobic002G400800 Sobic006G177200--Sobic002G400800 Sobic002G340000 Sobic002G340000 Sobic006G177200--Sobic002G340000 Sobic008G054600 Sobic008G054600 Sobic006G177200--Sobic008G054600 Sobic004G357100 Sobic004G357100 Sobic006G177200--Sobic004G357100 Sobic009G260650 Sobic009G260650 Sobic006G177200--Sobic009G260650 Sobic002G263700 Sobic002G263700 Sobic006G177200--Sobic002G263700 Sobic004G122900 Sobic004G122900 Sobic006G177200--Sobic004G122900 Sobic003G182300 Sobic003G182300 Sobic006G177200--Sobic003G182300 Sobic003G160000--Sobic006G116100 Sobic010G236400 Sobic010G236400 Sobic003G160000--Sobic010G236400 Sobic003G160000--Sobic003G241200 Sobic003G160000--Sobic008G153000 Sobic010G204400 Sobic010G204400 Sobic003G160000--Sobic010G204400 Sobic007G026000 Sobic007G026000 Sobic003G160000--Sobic007G026000 Sobic004G084700 Sobic004G084700 Sobic003G160000--Sobic004G084700 Sobic001G452000 Sobic001G452000 Sobic003G160000--Sobic001G452000 Sobic006G032400 Sobic006G032400 Sobic003G160000--Sobic006G032400 Sobic006G088400 Sobic006G088400 Sobic002G114000--Sobic006G088400 Sobic004G033300 Sobic004G033300 Sobic002G114000--Sobic004G033300 Sobic002G114000--Sobic010G012100 Sobic009G053101 Sobic009G053101 Sobic002G114000--Sobic009G053101 Sobic001G179560 Sobic001G179560 Sobic002G114000--Sobic001G179560 Sobic008G041000 Sobic008G041000 Sobic002G114000--Sobic008G041000 Sobic003G002700 Sobic003G002700 Sobic002G114000--Sobic003G002700 Sobic008G056350 Sobic008G056350 Sobic002G114000--Sobic008G056350 Sobic006G215050 Sobic006G215050 Sobic002G114000--Sobic006G215050 Sobic006G079400 Sobic006G079400 Sobic004G099800--Sobic006G079400 Sobic004G099800--Sobic003G037700 Sobic010G232200 Sobic010G232200 Sobic004G099800--Sobic010G232200 Sobic002G145101 Sobic002G145101 Sobic004G099800--Sobic002G145101 Sobic004G007100 Sobic004G007100 Sobic004G099800--Sobic004G007100 Sobic006G048500 Sobic006G048500 Sobic004G099800--Sobic006G048500 Sobic004G326200 Sobic004G326200 Sobic004G099800--Sobic004G326200 Sobic005G144400 Sobic005G144400 Sobic004G099800--Sobic005G144400 Sobic002G243900 Sobic002G243900 Sobic004G099800--Sobic002G243900 Sobic007G062800 Sobic007G062800 Sobic006G176800--Sobic007G062800 Sobic002G397500 Sobic002G397500 Sobic006G176800--Sobic002G397500 Sobic001G400500 Sobic001G400500 Sobic006G176800--Sobic001G400500 Sobic001G540400 Sobic001G540400 Sobic006G176800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic006G176800--Sobic005G112300 Sobic005G028600 Sobic005G028600 Sobic006G176800--Sobic005G028600 Sobic001G196500 Sobic001G196500 Sobic006G176800--Sobic001G196500 Sobic010G112100 Sobic010G112100 Sobic006G176800--Sobic010G112100 Sobic003G408600 Sobic003G408600 Sobic006G176800--Sobic003G408600 Sobic001G469800 Sobic001G469800 Sobic006G248500--Sobic001G469800 Sobic002G259800 Sobic002G259800 Sobic006G248500--Sobic002G259800 Sobic003G433500 Sobic003G433500 Sobic006G248500--Sobic003G433500 Sobic009G151200 Sobic009G151200 Sobic006G248500--Sobic009G151200 Sobic008G058800 Sobic008G058800 Sobic006G248500--Sobic008G058800 Sobic004G013600 Sobic004G013600 Sobic006G248500--Sobic004G013600 Sobic006G248500--Sobic007G026000 Sobic004G347100 Sobic004G347100 Sobic006G248500--Sobic004G347100 Sobic009G044900 Sobic009G044900 Sobic006G248500--Sobic009G044900
Octagon: transcription factors


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