Gene annotation
Transcriptome id Sobic.008G113500.1,Sobic.008G113500.2
Synonym Sb08g016740
Functional annotation adaptor complexes medium subunit family protein, expressed
UniProt A0A1B6PE14 , C5YP87
Pfam PF00928
Panther DB PTHR10529 PTHR10529:SF240
NCBI CDD KOG0937; Adaptor complexes medium subunit family
KEGG Orthology K19023; AP5M1, AP-5 complex subunit mu-1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20790 : clathrin adaptor complexes medium subunit family protein
RAP-DB (Rice) LOC_Os12g34370.1 : adaptor complexes medium subunit family protein, expressed
MaizeGDB (Corn) Zm00025a054396
Brachypodium KQJ86527 , KQJ86528
Barley HORVU5Hr1G027080.3 , HORVU5Hr1G027080.12 , HORVU5Hr1G027080.13 , HORVU5Hr1G027080.10 , HORVU5Hr1G027080.11 , HORVU5Hr1G027080.8 , HORVU5Hr1G027080.9 , HORVU5Hr1G027080.1 , HORVU5Hr1G027080.2 , HORVU5Hr1G027080.4 , HORVU5Hr1G027080.5 , HORVU5Hr1G027080.6 , HORVU5Hr1G027080.7
Wheat TraesCS5B02G104600 , TraesCS5B02G104600 , TraesCS5B02G104600 , TraesCS5B02G104600 , TraesCS5B02G104600 , TraesCS5B02G104600 , TraesCS5A02G099300 , TraesCS5A02G099300 , TraesCS5A02G099300 , TraesCS5D02G111600 , TraesCS5D02G111600 , TraesCS5D02G111600 , TraesCS5D02G111600 , TraesCS5D02G111600 , TraesCS5D02G111600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G113500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G050600 expressed protein -
2 Sobic.006G037700 phosphoribulokinase/Uridine kinase family protein, expressed -
3 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
4 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
5 Sobic.008G099800 expressed protein -
6 Sobic.003G147000 phospholipase D p1, putative, expressed K01115: phospholipase D1/2
7 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
8 Sobic.004G223600 transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
9 Sobic.010G251200 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K12447: UDP-sugar pyrophosphorylase
10 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
11 Sobic.004G051200 WD domain containing protein, putative, expressed -
12 Sobic.001G214600 expressed protein -
13 Sobic.001G332700 pentatricopeptide repeat protein PPR986-12, putative, expressed -
14 Sobic.008G153000 MATH domain containing protein, expressed -
15 Sobic.007G041500 diacylglycerol kinase, putative, expressed -
16 Sobic.001G219900 expressed protein -
17 Sobic.007G098500 BIG, putative, expressed K10691: UBR4, E3 ubiquitin-protein ligase UBR4
18 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
19 Sobic.004G236800 MAG2, putative, expressed -
20 Sobic.003G362000 3-deoxy-D-manno-octulosonic-acid transferase, putative, expressed K02527: kdtA, 3-deoxy-D-manno-octulosonic-acid transferase


Gene co-expression network
sample Sobic008G113500 Sobic008G113500 Sobic001G050600 Sobic001G050600 Sobic008G113500--Sobic001G050600 Sobic006G037700 Sobic006G037700 Sobic008G113500--Sobic006G037700 Sobic007G172400 Sobic007G172400 Sobic008G113500--Sobic007G172400 Sobic003G259100 Sobic003G259100 Sobic008G113500--Sobic003G259100 Sobic008G099800 Sobic008G099800 Sobic008G113500--Sobic008G099800 Sobic003G147000 Sobic003G147000 Sobic008G113500--Sobic003G147000 Sobic004G246100 Sobic004G246100 Sobic008G113500--Sobic004G246100 Sobic004G223600 Sobic004G223600 Sobic008G113500--Sobic004G223600 Sobic010G251200 Sobic010G251200 Sobic008G113500--Sobic010G251200 Sobic007G098500 Sobic007G098500 Sobic001G050600--Sobic007G098500 Sobic001G037100 Sobic001G037100 Sobic001G050600--Sobic001G037100 Sobic001G058700 Sobic001G058700 Sobic001G050600--Sobic001G058700 Sobic001G219900 Sobic001G219900 Sobic001G050600--Sobic001G219900 Sobic001G050600--Sobic007G172400 Sobic001G137000 Sobic001G137000 Sobic001G050600--Sobic001G137000 Sobic001G280900 Sobic001G280900 Sobic001G050600--Sobic001G280900 Sobic008G092600 Sobic008G092600 Sobic001G050600--Sobic008G092600 Sobic001G050600--Sobic003G259100 Sobic004G051200 Sobic004G051200 Sobic006G037700--Sobic004G051200 Sobic001G065000 Sobic001G065000 Sobic006G037700--Sobic001G065000 Sobic006G037700--Sobic008G099800 Sobic003G072200 Sobic003G072200 Sobic006G037700--Sobic003G072200 Sobic006G037700--Sobic007G098500 Sobic006G035300 Sobic006G035300 Sobic006G037700--Sobic006G035300 Sobic006G037700--Sobic001G050600 Sobic006G037700--Sobic003G259100 Sobic006G037700--Sobic001G058700 Sobic007G172400--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic007G172400--Sobic002G071500 Sobic007G172400--Sobic001G050600 Sobic004G347400 Sobic004G347400 Sobic007G172400--Sobic004G347400 Sobic002G419800 Sobic002G419800 Sobic007G172400--Sobic002G419800 Sobic007G172400--Sobic001G219900 Sobic004G113400 Sobic004G113400 Sobic007G172400--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic007G172400--Sobic001G474600 Sobic003G408600 Sobic003G408600 Sobic007G172400--Sobic003G408600 Sobic003G259100--Sobic004G113400 Sobic003G259100--Sobic008G099800 Sobic003G259100--Sobic001G050600 Sobic003G259100--Sobic003G072200 Sobic001G273700 Sobic001G273700 Sobic003G259100--Sobic001G273700 Sobic003G259100--Sobic001G058700 Sobic001G347500 Sobic001G347500 Sobic003G259100--Sobic001G347500 Sobic003G259100--Sobic001G219900 Sobic010G034000 Sobic010G034000 Sobic003G259100--Sobic010G034000 Sobic006G012500 Sobic006G012500 Sobic008G099800--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic008G099800--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic008G099800--Sobic004G135400 Sobic008G099800--Sobic001G347500 Sobic001G281100 Sobic001G281100 Sobic008G099800--Sobic001G281100 Sobic008G099800--Sobic004G113400 Sobic004G039600 Sobic004G039600 Sobic008G099800--Sobic004G039600 Sobic008G099800--Sobic003G072200 Sobic008G099800--Sobic001G065000 Sobic003G147000--Sobic001G065000 Sobic005G118600 Sobic005G118600 Sobic003G147000--Sobic005G118600 Sobic008G153000 Sobic008G153000 Sobic003G147000--Sobic008G153000 Sobic003G147000--Sobic006G035300 Sobic007G218000 Sobic007G218000 Sobic003G147000--Sobic007G218000 Sobic003G147000--Sobic006G037700 Sobic009G249700 Sobic009G249700 Sobic003G147000--Sobic009G249700 Sobic003G147000--Sobic003G259100 Sobic002G112700 Sobic002G112700 Sobic003G147000--Sobic002G112700 Sobic008G149800 Sobic008G149800 Sobic004G246100--Sobic008G149800 Sobic004G246100--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic004G246100--Sobic007G061700 Sobic002G063900 Sobic002G063900 Sobic004G246100--Sobic002G063900 Sobic008G173100 Sobic008G173100 Sobic004G246100--Sobic008G173100 Sobic006G116100 Sobic006G116100 Sobic004G246100--Sobic006G116100 Sobic006G046700 Sobic006G046700 Sobic004G246100--Sobic006G046700 Sobic009G137100 Sobic009G137100 Sobic004G246100--Sobic009G137100 Sobic002G260400 Sobic002G260400 Sobic004G246100--Sobic002G260400 Sobic004G223600--Sobic001G219900 Sobic001G214600 Sobic001G214600 Sobic004G223600--Sobic001G214600 Sobic002G317200 Sobic002G317200 Sobic004G223600--Sobic002G317200 Sobic003G307000 Sobic003G307000 Sobic004G223600--Sobic003G307000 Sobic007G042400 Sobic007G042400 Sobic004G223600--Sobic007G042400 Sobic009G247400 Sobic009G247400 Sobic004G223600--Sobic009G247400 Sobic001G311500 Sobic001G311500 Sobic004G223600--Sobic001G311500 Sobic004G223600--Sobic002G071500 Sobic003G152400 Sobic003G152400 Sobic004G223600--Sobic003G152400 Sobic003G100800 Sobic003G100800 Sobic010G251200--Sobic003G100800 Sobic009G094300 Sobic009G094300 Sobic010G251200--Sobic009G094300 Sobic001G474500 Sobic001G474500 Sobic010G251200--Sobic001G474500 Sobic010G251200--Sobic003G259100 Sobic010G251200--Sobic006G037700 Sobic004G052900 Sobic004G052900 Sobic010G251200--Sobic004G052900 Sobic009G057300 Sobic009G057300 Sobic010G251200--Sobic009G057300 Sobic001G248300 Sobic001G248300 Sobic010G251200--Sobic001G248300 Sobic007G088100 Sobic007G088100 Sobic010G251200--Sobic007G088100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.