Gene annotation
Transcriptome id Sobic.003G362000.1
Synonym Sb03g040370, KDTA
Functional annotation 3-deoxy-D-manno-octulosonic-acid transferase, putative, expressed
UniProt C5XQG9
Pfam PF04413
Panther DB PTHR23417 PTHR23417:SF2
NCBI CDD -
KEGG Orthology K02527; kdtA, 3-deoxy-D-manno-octulosonic-acid transferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G03770 : KDO transferase A
RAP-DB (Rice) LOC_Os01g63840.1 : 3-deoxy-D-manno-octulosonic-acid transferase, putative, expressed
MaizeGDB (Corn) Zm00025a026795
Brachypodium KQK10655
Barley HORVU3Hr1G084600.3 , HORVU3Hr1G084600.2 , HORVU3Hr1G084600.1 , HORVU3Hr1G084600.7 , HORVU3Hr1G084600.6 , HORVU3Hr1G084600.5 , HORVU3Hr1G084600.4 , HORVU3Hr1G084600.9 , HORVU3Hr1G084600.8 , HORVU3Hr1G084600.11 , HORVU3Hr1G084600.35 , HORVU3Hr1G084600.12 , HORVU3Hr1G084600.37 , HORVU3Hr1G084600.10 , HORVU3Hr1G084600.17 , HORVU3Hr1G084600.16 , HORVU3Hr1G084600.15 , HORVU3Hr1G084600.14 , HORVU3Hr1G084600.31 , HORVU3Hr1G084600.19 , HORVU3Hr1G084600.18 , HORVU3Hr1G084600.39 , HORVU3Hr1G084600.38 , HORVU3Hr1G084600.30 , HORVU3Hr1G084600.33 , HORVU3Hr1G084600.32 , HORVU3Hr1G084600.22 , HORVU3Hr1G084600.45 , HORVU3Hr1G084600.20 , HORVU3Hr1G084600.34 , HORVU3Hr1G084600.21 , HORVU3Hr1G084600.27 , HORVU3Hr1G084600.40 , HORVU3Hr1G084600.36 , HORVU3Hr1G084600.13 , HORVU3Hr1G084600.28 , HORVU3Hr1G084600.29 , HORVU3Hr1G084600.24 , HORVU3Hr1G084600.44 , HORVU3Hr1G084600.23 , HORVU3Hr1G084600.46 , HORVU3Hr1G084600.43 , HORVU3Hr1G084600.26 , HORVU3Hr1G084600.41 , HORVU3Hr1G084600.42 , HORVU3Hr1G084600.25
Wheat TraesCS3D02G363100 , TraesCS3D02G363100 , TraesCS3B02G402100 , TraesCS3B02G402100 , TraesCS3A02G370200 , TraesCS3A02G370200
Populus -


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cDNA sequences
Sobic.003G362000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G147833 - -
2 Sobic.010G094700 aberrant root formation protein 4, putative, expressed -
3 Sobic.001G016600 FAR1 family protein, expressed -
4 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
5 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
6 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
7 Sobic.001G114000 expressed protein -
8 Sobic.001G214600 expressed protein -
9 Sobic.009G154500 sec23/Sec24 zinc finger family protein, expressed -
10 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
11 Sobic.003G057700 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.007G132100 myrosinase precursor, putative, expressed -
13 Sobic.002G112700 glutamine-dependent NAD, putative, expressed K01950: E6.3.5.1, NADSYN1, QNS1, NAD+ synthase (glutamine-hydrolysing)
14 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
15 Sobic.003G249600 vacuolar protein sorting-associated protein 16, putative, expressed -
16 Sobic.001G347500 expressed protein -
17 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
18 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
19 Sobic.005G027840 most plausible candidate gene for Rf5(PubMedID : 36275935) K17964: leucine-rich PPR motif-containing protein, mitochondrial
20 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2


Gene co-expression network
sample Sobic003G362000 Sobic003G362000 Sobic010G147833 Sobic010G147833 Sobic003G362000--Sobic010G147833 Sobic010G094700 Sobic010G094700 Sobic003G362000--Sobic010G094700 Sobic001G016600 Sobic001G016600 Sobic003G362000--Sobic001G016600 Sobic001G493200 Sobic001G493200 Sobic003G362000--Sobic001G493200 Sobic004G096400 Sobic004G096400 Sobic003G362000--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic003G362000--Sobic006G234700 Sobic001G114000 Sobic001G114000 Sobic003G362000--Sobic001G114000 Sobic001G214600 Sobic001G214600 Sobic003G362000--Sobic001G214600 Sobic009G154500 Sobic009G154500 Sobic003G362000--Sobic009G154500 Sobic010G147833--Sobic001G214600 Sobic004G260100 Sobic004G260100 Sobic010G147833--Sobic004G260100 Sobic001G170100 Sobic001G170100 Sobic010G147833--Sobic001G170100 Sobic007G019300 Sobic007G019300 Sobic010G147833--Sobic007G019300 Sobic001G426600 Sobic001G426600 Sobic010G147833--Sobic001G426600 Sobic003G057700 Sobic003G057700 Sobic010G147833--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic010G147833--Sobic003G249600 Sobic007G120500 Sobic007G120500 Sobic010G147833--Sobic007G120500 Sobic001G287500 Sobic001G287500 Sobic010G147833--Sobic001G287500 Sobic005G191900 Sobic005G191900 Sobic010G094700--Sobic005G191900 Sobic009G109200 Sobic009G109200 Sobic010G094700--Sobic009G109200 Sobic010G279450 Sobic010G279450 Sobic010G094700--Sobic010G279450 Sobic010G079500 Sobic010G079500 Sobic010G094700--Sobic010G079500 Sobic001G529600 Sobic001G529600 Sobic010G094700--Sobic001G529600 Sobic010G094700--Sobic004G096400 Sobic001G311500 Sobic001G311500 Sobic010G094700--Sobic001G311500 Sobic008G132900 Sobic008G132900 Sobic010G094700--Sobic008G132900 Sobic001G393900 Sobic001G393900 Sobic010G094700--Sobic001G393900 Sobic005G112300 Sobic005G112300 Sobic001G016600--Sobic005G112300 Sobic005G128400 Sobic005G128400 Sobic001G016600--Sobic005G128400 Sobic001G363500 Sobic001G363500 Sobic001G016600--Sobic001G363500 Sobic001G241200 Sobic001G241200 Sobic001G016600--Sobic001G241200 Sobic007G105100 Sobic007G105100 Sobic001G016600--Sobic007G105100 Sobic001G289600 Sobic001G289600 Sobic001G016600--Sobic001G289600 Sobic003G229500 Sobic003G229500 Sobic001G016600--Sobic003G229500 Sobic001G002000 Sobic001G002000 Sobic001G016600--Sobic001G002000 Sobic001G540400 Sobic001G540400 Sobic001G016600--Sobic001G540400 Sobic009G084900 Sobic009G084900 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic010G059500 Sobic010G059500 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic006G077200 Sobic006G077200 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic004G096400--Sobic006G234700 Sobic009G192300 Sobic009G192300 Sobic004G096400--Sobic009G192300 Sobic004G096400--Sobic010G059500 Sobic004G096400--Sobic001G493200 Sobic004G096400--Sobic009G084900 Sobic004G096400--Sobic001G433800 Sobic004G096400--Sobic003G249600 Sobic004G096400--Sobic006G077200 Sobic004G096400--Sobic007G132100 Sobic006G234700--Sobic004G096400 Sobic006G234700--Sobic010G059500 Sobic006G234700--Sobic009G192300 Sobic007G042400 Sobic007G042400 Sobic006G234700--Sobic007G042400 Sobic003G444800 Sobic003G444800 Sobic006G234700--Sobic003G444800 Sobic006G234700--Sobic001G493200 Sobic006G234700--Sobic009G084900 Sobic006G234700--Sobic001G433800 Sobic002G083500 Sobic002G083500 Sobic006G234700--Sobic002G083500 Sobic007G217000 Sobic007G217000 Sobic001G114000--Sobic007G217000 Sobic002G112700 Sobic002G112700 Sobic001G114000--Sobic002G112700 Sobic001G065000 Sobic001G065000 Sobic001G114000--Sobic001G065000 Sobic004G067700 Sobic004G067700 Sobic001G114000--Sobic004G067700 Sobic009G166300 Sobic009G166300 Sobic001G114000--Sobic009G166300 Sobic008G047800 Sobic008G047800 Sobic001G114000--Sobic008G047800 Sobic001G114000--Sobic004G072100 Sobic005G118600 Sobic005G118600 Sobic001G114000--Sobic005G118600 Sobic009G126400 Sobic009G126400 Sobic001G114000--Sobic009G126400 Sobic001G214600--Sobic004G260100 Sobic009G247400 Sobic009G247400 Sobic001G214600--Sobic009G247400 Sobic001G214600--Sobic009G084900 Sobic001G214600--Sobic010G147833 Sobic002G317200 Sobic002G317200 Sobic001G214600--Sobic002G317200 Sobic004G223600 Sobic004G223600 Sobic001G214600--Sobic004G223600 Sobic001G214600--Sobic006G234700 Sobic001G219900 Sobic001G219900 Sobic001G214600--Sobic001G219900 Sobic001G214600--Sobic001G493200 Sobic009G154500--Sobic006G234700 Sobic009G166600 Sobic009G166600 Sobic009G154500--Sobic009G166600 Sobic009G154500--Sobic007G042400 Sobic003G394200 Sobic003G394200 Sobic009G154500--Sobic003G394200 Sobic009G249700 Sobic009G249700 Sobic009G154500--Sobic009G249700 Sobic007G088100 Sobic007G088100 Sobic009G154500--Sobic007G088100 Sobic006G037700 Sobic006G037700 Sobic009G154500--Sobic006G037700 Sobic002G405400 Sobic002G405400 Sobic009G154500--Sobic002G405400 Sobic007G218000 Sobic007G218000 Sobic009G154500--Sobic007G218000
Octagon: transcription factors


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