Gene annotation
Transcriptome id Sobic.002G081100.1
Synonym Sb02g006770
Functional annotation KH domain containing protein, putative, expressed
UniProt C5XDG1
Pfam PF00013 PF16544
Panther DB PTHR11208 PTHR11208:SF58
NCBI CDD KOG1588; RNA-binding protein Sam68 and related KH domain proteins
KEGG Orthology K14945; protein quaking
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G38610 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os07g12490.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045435 , Zm00025a044028 , Zm00025a013387
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G081100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
2 Sobic.006G176800 "OsMKKK10(Ortholog in rice:Gou et al., 2018)"(PubMedID : 31659898)@STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
3 Sobic.010G012100 expressed protein K18735: protein SMG9
4 Sobic.006G200600 expressed protein -
5 Sobic.003G001100 Lg106, putative, expressed -
6 Sobic.004G127400 CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed -
7 Sobic.003G139900 "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG"(PubMedID : 27501690)@OsSPL1 - SBP-box gene family member, expressed -
8 Sobic.003G063000 expressed protein -
9 Sobic.004G348300 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
10 Sobic.006G148100 DUF647 domain containing protein, putative, expressed -
11 Sobic.001G261436 - -
12 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
13 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
14 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
15 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
16 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
17 Sobic.003G247300 protein of unknown function DUF1296 domain containing protein, expressed -
18 Sobic.001G181700 expressed protein -
19 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
20 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2


Gene co-expression network
sample Sobic002G081100 Sobic002G081100 Sobic004G353200 Sobic004G353200 Sobic002G081100--Sobic004G353200 Sobic006G176800 Sobic006G176800 Sobic002G081100--Sobic006G176800 Sobic010G012100 Sobic010G012100 Sobic002G081100--Sobic010G012100 Sobic006G200600 Sobic006G200600 Sobic002G081100--Sobic006G200600 Sobic003G001100 Sobic003G001100 Sobic002G081100--Sobic003G001100 Sobic004G127400 Sobic004G127400 Sobic002G081100--Sobic004G127400 Sobic003G139900 Sobic003G139900 Sobic002G081100--Sobic003G139900 Sobic003G063000 Sobic003G063000 Sobic002G081100--Sobic003G063000 Sobic004G348300 Sobic004G348300 Sobic002G081100--Sobic004G348300 Sobic004G353200--Sobic006G200600 Sobic001G392300 Sobic001G392300 Sobic004G353200--Sobic001G392300 Sobic007G075900 Sobic007G075900 Sobic004G353200--Sobic007G075900 Sobic001G007000 Sobic001G007000 Sobic004G353200--Sobic001G007000 Sobic004G066200 Sobic004G066200 Sobic004G353200--Sobic004G066200 Sobic008G047800 Sobic008G047800 Sobic004G353200--Sobic008G047800 Sobic004G274200 Sobic004G274200 Sobic004G353200--Sobic004G274200 Sobic010G053800 Sobic010G053800 Sobic004G353200--Sobic010G053800 Sobic003G102400 Sobic003G102400 Sobic004G353200--Sobic003G102400 Sobic007G062800 Sobic007G062800 Sobic006G176800--Sobic007G062800 Sobic002G397500 Sobic002G397500 Sobic006G176800--Sobic002G397500 Sobic001G400500 Sobic001G400500 Sobic006G176800--Sobic001G400500 Sobic001G540400 Sobic001G540400 Sobic006G176800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic006G176800--Sobic005G112300 Sobic005G028600 Sobic005G028600 Sobic006G176800--Sobic005G028600 Sobic001G196500 Sobic001G196500 Sobic006G176800--Sobic001G196500 Sobic010G112100 Sobic010G112100 Sobic006G176800--Sobic010G112100 Sobic003G408600 Sobic003G408600 Sobic006G176800--Sobic003G408600 Sobic009G184600 Sobic009G184600 Sobic010G012100--Sobic009G184600 Sobic003G037700 Sobic003G037700 Sobic010G012100--Sobic003G037700 Sobic006G116100 Sobic006G116100 Sobic010G012100--Sobic006G116100 Sobic006G177200 Sobic006G177200 Sobic010G012100--Sobic006G177200 Sobic003G160000 Sobic003G160000 Sobic010G012100--Sobic003G160000 Sobic002G114000 Sobic002G114000 Sobic010G012100--Sobic002G114000 Sobic004G099800 Sobic004G099800 Sobic010G012100--Sobic004G099800 Sobic010G012100--Sobic006G176800 Sobic006G248500 Sobic006G248500 Sobic010G012100--Sobic006G248500 Sobic006G200600--Sobic004G353200 Sobic001G281600 Sobic001G281600 Sobic006G200600--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic006G200600--Sobic004G121100 Sobic006G200600--Sobic001G392300 Sobic010G251000 Sobic010G251000 Sobic006G200600--Sobic010G251000 Sobic006G200600--Sobic008G047800 Sobic009G205200 Sobic009G205200 Sobic006G200600--Sobic009G205200 Sobic007G078600 Sobic007G078600 Sobic006G200600--Sobic007G078600 Sobic003G248200 Sobic003G248200 Sobic006G200600--Sobic003G248200 Sobic003G001000 Sobic003G001000 Sobic003G001100--Sobic003G001000 Sobic001G292200 Sobic001G292200 Sobic003G001100--Sobic001G292200 Sobic001G000200 Sobic001G000200 Sobic003G001100--Sobic001G000200 Sobic007G177000 Sobic007G177000 Sobic003G001100--Sobic007G177000 Sobic007G024700 Sobic007G024700 Sobic003G001100--Sobic007G024700 Sobic001G253700 Sobic001G253700 Sobic003G001100--Sobic001G253700 Sobic009G259400 Sobic009G259400 Sobic003G001100--Sobic009G259400 Sobic002G340100 Sobic002G340100 Sobic003G001100--Sobic002G340100 Sobic001G071400 Sobic001G071400 Sobic003G001100--Sobic001G071400 Sobic009G047200 Sobic009G047200 Sobic004G127400--Sobic009G047200 Sobic002G143500 Sobic002G143500 Sobic004G127400--Sobic002G143500 Sobic004G127400--Sobic001G071400 Sobic007G116200 Sobic007G116200 Sobic004G127400--Sobic007G116200 Sobic006G131500 Sobic006G131500 Sobic004G127400--Sobic006G131500 Sobic006G040500 Sobic006G040500 Sobic004G127400--Sobic006G040500 Sobic002G008900 Sobic002G008900 Sobic004G127400--Sobic002G008900 Sobic001G363500 Sobic001G363500 Sobic004G127400--Sobic001G363500 Sobic006G055200 Sobic006G055200 Sobic004G127400--Sobic006G055200 Sobic004G200200 Sobic004G200200 Sobic003G139900--Sobic004G200200 Sobic005G027400 Sobic005G027400 Sobic003G139900--Sobic005G027400 Sobic007G193700 Sobic007G193700 Sobic003G139900--Sobic007G193700 Sobic002G134200 Sobic002G134200 Sobic003G139900--Sobic002G134200 Sobic009G191000 Sobic009G191000 Sobic003G139900--Sobic009G191000 Sobic001G260400 Sobic001G260400 Sobic003G139900--Sobic001G260400 Sobic003G313500 Sobic003G313500 Sobic003G139900--Sobic003G313500 Sobic010G143800 Sobic010G143800 Sobic003G139900--Sobic010G143800 Sobic004G263600 Sobic004G263600 Sobic003G139900--Sobic004G263600 Sobic003G063000--Sobic009G259400 Sobic004G006200 Sobic004G006200 Sobic003G063000--Sobic004G006200 Sobic003G063000--Sobic004G348300 Sobic003G063000--Sobic001G000200 Sobic002G352600 Sobic002G352600 Sobic003G063000--Sobic002G352600 Sobic009G217100 Sobic009G217100 Sobic003G063000--Sobic009G217100 Sobic007G062600 Sobic007G062600 Sobic003G063000--Sobic007G062600 Sobic001G121200 Sobic001G121200 Sobic003G063000--Sobic001G121200 Sobic003G063000--Sobic004G066200 Sobic003G012200 Sobic003G012200 Sobic004G348300--Sobic003G012200 Sobic003G344900 Sobic003G344900 Sobic004G348300--Sobic003G344900 Sobic001G199100 Sobic001G199100 Sobic004G348300--Sobic001G199100 Sobic004G348300--Sobic002G352600 Sobic006G249700 Sobic006G249700 Sobic004G348300--Sobic006G249700 Sobic004G348300--Sobic004G006200 Sobic002G059300 Sobic002G059300 Sobic004G348300--Sobic002G059300 Sobic004G348300--Sobic009G217100 Sobic005G004200 Sobic005G004200 Sobic004G348300--Sobic005G004200
Octagon: transcription factors


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