Gene annotation
Transcriptome id Sobic.004G127400.1
Synonym Sb04g010990, ckl3
Functional annotation CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed
UniProt A0A194YP95
Pfam PF00069
Panther DB PTHR11909 PTHR11909:SF97
NCBI CDD KOG1163; Casein kinase (serine/threonine/tyrosine protein kinase)
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G28880 : casein kinase I-like 3
RAP-DB (Rice) LOC_Os02g17910.1 : CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed
MaizeGDB (Corn) Zm00025a044746 , Zm00025a034359 , Zm00025a036809
Brachypodium KQJ94405 , KQJ94404
Barley HORVU0Hr1G016190.20 , HORVU0Hr1G016190.18 , HORVU0Hr1G016190.11 , HORVU0Hr1G016190.10 , HORVU0Hr1G016190.19 , HORVU0Hr1G016190.17 , HORVU0Hr1G016190.16 , HORVU0Hr1G016190.15 , HORVU0Hr1G016190.14 , HORVU0Hr1G016190.13 , HORVU0Hr1G016190.12 , HORVU0Hr1G016190.7 , HORVU0Hr1G016190.6 , HORVU0Hr1G016190.5 , HORVU0Hr1G016190.4 , HORVU0Hr1G016190.3 , HORVU0Hr1G016190.2 , HORVU0Hr1G016190.1 , HORVU0Hr1G016190.9 , HORVU0Hr1G016190.8
Wheat TraesCS6B02G218400 , TraesCS6D02G174800 , TraesCS6D02G174800 , TraesCS6D02G174800 , TraesCS6A02G196400 , TraesCS6A02G196400
Populus -


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cDNA sequences
Sobic.004G127400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G047200 protein kinase domain containing protein, expressed -
2 Sobic.002G143500 sulfate transporter 4.1, chloroplast precursor, putative, expressed K18059: sulfate transporter 4
3 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
4 Sobic.007G116200 expressed protein K13217: PRPF39, pre-mRNA-processing factor 39
5 Sobic.006G131500 serine/threonine-protein kinase GCN2, putative, expressed K16196: eukaryotic translation initiation factor 2-alpha kinase 4
6 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
7 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
8 Sobic.001G363500 DIRP family protein, putative, expressed -
9 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
10 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
11 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
12 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
13 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
14 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
15 Sobic.004G329400 formin, putative, expressed -
16 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
17 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
18 Sobic.009G191000 MATH domain containing protein, expressed -
19 Sobic.003G443100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
20 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4


Gene co-expression network
sample Sobic004G127400 Sobic004G127400 Sobic009G047200 Sobic009G047200 Sobic004G127400--Sobic009G047200 Sobic002G143500 Sobic002G143500 Sobic004G127400--Sobic002G143500 Sobic001G071400 Sobic001G071400 Sobic004G127400--Sobic001G071400 Sobic007G116200 Sobic007G116200 Sobic004G127400--Sobic007G116200 Sobic006G131500 Sobic006G131500 Sobic004G127400--Sobic006G131500 Sobic006G040500 Sobic006G040500 Sobic004G127400--Sobic006G040500 Sobic002G008900 Sobic002G008900 Sobic004G127400--Sobic002G008900 Sobic001G363500 Sobic001G363500 Sobic004G127400--Sobic001G363500 Sobic006G055200 Sobic006G055200 Sobic004G127400--Sobic006G055200 Sobic001G219600 Sobic001G219600 Sobic009G047200--Sobic001G219600 Sobic003G072200 Sobic003G072200 Sobic009G047200--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic009G047200--Sobic002G397500 Sobic003G408600 Sobic003G408600 Sobic009G047200--Sobic003G408600 Sobic009G047200--Sobic001G071400 Sobic001G002000 Sobic001G002000 Sobic009G047200--Sobic001G002000 Sobic004G329400 Sobic004G329400 Sobic009G047200--Sobic004G329400 Sobic002G317200 Sobic002G317200 Sobic009G047200--Sobic002G317200 Sobic002G309600 Sobic002G309600 Sobic009G047200--Sobic002G309600 Sobic001G166600 Sobic001G166600 Sobic002G143500--Sobic001G166600 Sobic006G216800 Sobic006G216800 Sobic002G143500--Sobic006G216800 Sobic002G143500--Sobic001G219600 Sobic006G058100 Sobic006G058100 Sobic002G143500--Sobic006G058100 Sobic002G143500--Sobic001G071400 Sobic002G143500--Sobic007G116200 Sobic003G141500 Sobic003G141500 Sobic002G143500--Sobic003G141500 Sobic003G280800 Sobic003G280800 Sobic002G143500--Sobic003G280800 Sobic009G126400 Sobic009G126400 Sobic002G143500--Sobic009G126400 Sobic002G134200 Sobic002G134200 Sobic001G071400--Sobic002G134200 Sobic001G071400--Sobic002G309600 Sobic001G071400--Sobic003G280800 Sobic008G047800 Sobic008G047800 Sobic001G071400--Sobic008G047800 Sobic009G191000 Sobic009G191000 Sobic001G071400--Sobic009G191000 Sobic001G071400--Sobic001G219600 Sobic005G112300 Sobic005G112300 Sobic001G071400--Sobic005G112300 Sobic002G315200 Sobic002G315200 Sobic001G071400--Sobic002G315200 Sobic001G071400--Sobic002G008900 Sobic007G116200--Sobic006G216800 Sobic010G010700 Sobic010G010700 Sobic007G116200--Sobic010G010700 Sobic007G116200--Sobic002G134200 Sobic006G182900 Sobic006G182900 Sobic007G116200--Sobic006G182900 Sobic004G359800 Sobic004G359800 Sobic007G116200--Sobic004G359800 Sobic010G139000 Sobic010G139000 Sobic007G116200--Sobic010G139000 Sobic010G256700 Sobic010G256700 Sobic007G116200--Sobic010G256700 Sobic004G209600 Sobic004G209600 Sobic007G116200--Sobic004G209600 Sobic007G116200--Sobic003G280800 Sobic005G008800 Sobic005G008800 Sobic006G131500--Sobic005G008800 Sobic001G498600 Sobic001G498600 Sobic006G131500--Sobic001G498600 Sobic006G131500--Sobic004G209600 Sobic006G131500--Sobic003G280800 Sobic006G131500--Sobic006G216800 Sobic001G241200 Sobic001G241200 Sobic006G131500--Sobic001G241200 Sobic006G131500--Sobic002G134200 Sobic001G146800 Sobic001G146800 Sobic006G131500--Sobic001G146800 Sobic001G072500 Sobic001G072500 Sobic006G131500--Sobic001G072500 Sobic003G186000 Sobic003G186000 Sobic006G040500--Sobic003G186000 Sobic005G001000 Sobic005G001000 Sobic006G040500--Sobic005G001000 Sobic007G062800 Sobic007G062800 Sobic006G040500--Sobic007G062800 Sobic006G040500--Sobic005G112300 Sobic006G040500--Sobic010G010700 Sobic006G040500--Sobic002G008900 Sobic009G256400 Sobic009G256400 Sobic006G040500--Sobic009G256400 Sobic010G123600 Sobic010G123600 Sobic006G040500--Sobic010G123600 Sobic004G276400 Sobic004G276400 Sobic006G040500--Sobic004G276400 Sobic002G008900--Sobic009G191000 Sobic002G411600 Sobic002G411600 Sobic002G008900--Sobic002G411600 Sobic002G008900--Sobic007G062800 Sobic003G422500 Sobic003G422500 Sobic002G008900--Sobic003G422500 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic004G034900 Sobic004G034900 Sobic002G008900--Sobic004G034900 Sobic010G206900 Sobic010G206900 Sobic002G008900--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic002G008900--Sobic009G053900 Sobic001G363500--Sobic005G112300 Sobic001G363500--Sobic007G062800 Sobic010G247800 Sobic010G247800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic010G112100 Sobic010G112100 Sobic001G363500--Sobic010G112100 Sobic004G242400 Sobic004G242400 Sobic001G363500--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic001G363500--Sobic001G433800 Sobic010G279450 Sobic010G279450 Sobic001G363500--Sobic010G279450 Sobic001G363500--Sobic010G139000 Sobic001G194200 Sobic001G194200 Sobic006G055200--Sobic001G194200 Sobic006G055200--Sobic010G010700 Sobic006G055200--Sobic005G001000 Sobic006G055200--Sobic004G276400 Sobic004G291900 Sobic004G291900 Sobic006G055200--Sobic004G291900 Sobic006G055200--Sobic003G186000 Sobic001G289800 Sobic001G289800 Sobic006G055200--Sobic001G289800 Sobic004G263600 Sobic004G263600 Sobic006G055200--Sobic004G263600 Sobic006G055200--Sobic001G002000
Octagon: transcription factors


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