Gene annotation
Transcriptome id Sobic.002G400800.1
Synonym Sb02g041570
Functional annotation expressed protein
UniProt C5X451
Pfam PF03385
Panther DB PTHR31362 PTHR31362:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41770 : Protein of unknown function (DUF288)
RAP-DB (Rice) LOC_Os07g46300.1 : expressed protein
MaizeGDB (Corn) Zm00025a048997
Brachypodium KQK14887
Barley -
Wheat TraesCS2B02G157700 , TraesCS2A02G134100 , TraesCS2D02G136300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G177200 amine oxidase, putative, expressed K11450: KDM1A, AOF2, [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
2 Sobic.003G285000 OsFBX85 - F-box domain containing protein, expressed -
3 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
4 Sobic.004G305100 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.001G386100 RNA recognition motif containing protein, putative, expressed K13157: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
6 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
7 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
8 Sobic.008G054600 splicing factor, putative, expressed -
9 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
10 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
11 Sobic.003G332500 EAP30/Vps36 family domain containing protein, expressed K12190: VPS36, ESCRT-II complex subunit VPS36
12 Sobic.005G106101 - -
13 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
14 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
15 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
16 Sobic.001G332700 pentatricopeptide repeat protein PPR986-12, putative, expressed -
17 Sobic.004G236800 MAG2, putative, expressed -
18 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
19 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
20 Sobic.008G088875 - -


Gene co-expression network
sample Sobic002G400800 Sobic002G400800 Sobic006G177200 Sobic006G177200 Sobic002G400800--Sobic006G177200 Sobic003G285000 Sobic003G285000 Sobic002G400800--Sobic003G285000 Sobic003G160000 Sobic003G160000 Sobic002G400800--Sobic003G160000 Sobic004G305100 Sobic004G305100 Sobic002G400800--Sobic004G305100 Sobic001G386100 Sobic001G386100 Sobic002G400800--Sobic001G386100 Sobic001G008200 Sobic001G008200 Sobic002G400800--Sobic001G008200 Sobic004G096400 Sobic004G096400 Sobic002G400800--Sobic004G096400 Sobic008G054600 Sobic008G054600 Sobic002G400800--Sobic008G054600 Sobic004G309900 Sobic004G309900 Sobic002G400800--Sobic004G309900 Sobic001G313400 Sobic001G313400 Sobic006G177200--Sobic001G313400 Sobic006G177200--Sobic002G400800 Sobic002G340000 Sobic002G340000 Sobic006G177200--Sobic002G340000 Sobic006G177200--Sobic008G054600 Sobic004G357100 Sobic004G357100 Sobic006G177200--Sobic004G357100 Sobic009G260650 Sobic009G260650 Sobic006G177200--Sobic009G260650 Sobic002G263700 Sobic002G263700 Sobic006G177200--Sobic002G263700 Sobic004G122900 Sobic004G122900 Sobic006G177200--Sobic004G122900 Sobic003G182300 Sobic003G182300 Sobic006G177200--Sobic003G182300 Sobic001G544500 Sobic001G544500 Sobic003G285000--Sobic001G544500 Sobic004G135300 Sobic004G135300 Sobic003G285000--Sobic004G135300 Sobic003G285000--Sobic004G096400 Sobic009G132700 Sobic009G132700 Sobic003G285000--Sobic009G132700 Sobic001G222250 Sobic001G222250 Sobic003G285000--Sobic001G222250 Sobic010G079900 Sobic010G079900 Sobic003G285000--Sobic010G079900 Sobic005G027400 Sobic005G027400 Sobic003G285000--Sobic005G027400 Sobic010G228700 Sobic010G228700 Sobic003G285000--Sobic010G228700 Sobic001G261496 Sobic001G261496 Sobic003G285000--Sobic001G261496 Sobic006G116100 Sobic006G116100 Sobic003G160000--Sobic006G116100 Sobic010G236400 Sobic010G236400 Sobic003G160000--Sobic010G236400 Sobic003G241200 Sobic003G241200 Sobic003G160000--Sobic003G241200 Sobic008G153000 Sobic008G153000 Sobic003G160000--Sobic008G153000 Sobic010G204400 Sobic010G204400 Sobic003G160000--Sobic010G204400 Sobic007G026000 Sobic007G026000 Sobic003G160000--Sobic007G026000 Sobic004G084700 Sobic004G084700 Sobic003G160000--Sobic004G084700 Sobic001G452000 Sobic001G452000 Sobic003G160000--Sobic001G452000 Sobic006G032400 Sobic006G032400 Sobic003G160000--Sobic006G032400 Sobic003G098900 Sobic003G098900 Sobic004G305100--Sobic003G098900 Sobic010G041000 Sobic010G041000 Sobic004G305100--Sobic010G041000 Sobic001G502600 Sobic001G502600 Sobic004G305100--Sobic001G502600 Sobic006G125900 Sobic006G125900 Sobic004G305100--Sobic006G125900 Sobic006G231400 Sobic006G231400 Sobic004G305100--Sobic006G231400 Sobic002G318800 Sobic002G318800 Sobic004G305100--Sobic002G318800 Sobic010G215900 Sobic010G215900 Sobic004G305100--Sobic010G215900 Sobic009G163600 Sobic009G163600 Sobic004G305100--Sobic009G163600 Sobic006G140400 Sobic006G140400 Sobic004G305100--Sobic006G140400 Sobic010G086600 Sobic010G086600 Sobic001G386100--Sobic010G086600 Sobic002G292900 Sobic002G292900 Sobic001G386100--Sobic002G292900 Sobic001G542450 Sobic001G542450 Sobic001G386100--Sobic001G542450 Sobic002G245000 Sobic002G245000 Sobic001G386100--Sobic002G245000 Sobic007G042900 Sobic007G042900 Sobic001G386100--Sobic007G042900 Sobic002G369701 Sobic002G369701 Sobic001G386100--Sobic002G369701 Sobic006G210700 Sobic006G210700 Sobic001G386100--Sobic006G210700 Sobic009G249700 Sobic009G249700 Sobic001G386100--Sobic009G249700 Sobic004G320700 Sobic004G320700 Sobic001G386100--Sobic004G320700 Sobic001G008200--Sobic004G309900 Sobic005G172500 Sobic005G172500 Sobic001G008200--Sobic005G172500 Sobic001G227400 Sobic001G227400 Sobic001G008200--Sobic001G227400 Sobic001G493200 Sobic001G493200 Sobic001G008200--Sobic001G493200 Sobic003G133900 Sobic003G133900 Sobic001G008200--Sobic003G133900 Sobic006G240100 Sobic006G240100 Sobic001G008200--Sobic006G240100 Sobic004G155600 Sobic004G155600 Sobic001G008200--Sobic004G155600 Sobic001G473600 Sobic001G473600 Sobic001G008200--Sobic001G473600 Sobic001G145400 Sobic001G145400 Sobic001G008200--Sobic001G145400 Sobic006G234700 Sobic006G234700 Sobic004G096400--Sobic006G234700 Sobic009G192300 Sobic009G192300 Sobic004G096400--Sobic009G192300 Sobic010G059500 Sobic010G059500 Sobic004G096400--Sobic010G059500 Sobic004G096400--Sobic001G493200 Sobic009G084900 Sobic009G084900 Sobic004G096400--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic004G096400--Sobic001G433800 Sobic003G249600 Sobic003G249600 Sobic004G096400--Sobic003G249600 Sobic006G077200 Sobic006G077200 Sobic004G096400--Sobic006G077200 Sobic007G132100 Sobic007G132100 Sobic004G096400--Sobic007G132100 Sobic001G014300 Sobic001G014300 Sobic008G054600--Sobic001G014300 Sobic004G256500 Sobic004G256500 Sobic008G054600--Sobic004G256500 Sobic008G054600--Sobic004G096400 Sobic002G396500 Sobic002G396500 Sobic008G054600--Sobic002G396500 Sobic003G405500 Sobic003G405500 Sobic008G054600--Sobic003G405500 Sobic006G224800 Sobic006G224800 Sobic008G054600--Sobic006G224800 Sobic008G054600--Sobic009G084900 Sobic006G166200 Sobic006G166200 Sobic008G054600--Sobic006G166200 Sobic004G236800 Sobic004G236800 Sobic008G054600--Sobic004G236800 Sobic004G309900--Sobic003G133900 Sobic007G183900 Sobic007G183900 Sobic004G309900--Sobic007G183900 Sobic003G062300 Sobic003G062300 Sobic004G309900--Sobic003G062300 Sobic004G309900--Sobic006G077200 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic006G210000 Sobic006G210000 Sobic004G309900--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G309900--Sobic003G416700 Sobic004G309900--Sobic001G008200
Octagon: transcription factors


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