Gene annotation
Transcriptome id Sobic.002G049200.1
Synonym Sb02g004100
Functional annotation PHD-finger domain containing protein, expressed
UniProt C5XAE3
Pfam PF00628 PF16135
Panther DB PTHR24098 PTHR24098:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G14920 : Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
RAP-DB (Rice) LOC_Os07g07690.1 : PHD-finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045121
Brachypodium KQK20676 , KQK20677
Barley HORVU2Hr1G054040.8 , HORVU2Hr1G054040.7 , HORVU2Hr1G054040.6 , HORVU2Hr1G054040.20 , HORVU2Hr1G054040.19 , HORVU2Hr1G054040.18 , HORVU2Hr1G054040.15 , HORVU2Hr1G054040.14 , HORVU2Hr1G054040.17 , HORVU2Hr1G054040.16 , HORVU2Hr1G054040.11 , HORVU2Hr1G054040.10 , HORVU2Hr1G054040.13 , HORVU2Hr1G054040.12
Wheat TraesCS2A02G235700 , TraesCS2B02G257600 , TraesCS2B02G257600 , TraesCS2B02G257600 , TraesCS2D02G238100 , TraesCS2D02G238100
Populus -


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cDNA sequences
Sobic.002G049200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G109400 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.007G018700 kinesin motor domain containing protein, putative, expressed -
3 Sobic.005G050600 protein of unknown function domain containing protein, expressed -
4 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
5 Sobic.002G059100 OsFBX239 - F-box domain containing protein, expressed -
6 Sobic.001G059800 cupin domain containing protein, expressed -
7 Sobic.009G237700 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
8 Sobic.001G297300 - -
9 Sobic.004G311400 PHD-finger domain containing protein, putative, expressed -
10 Sobic.004G214000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphoribosyl transferase, putative, expressed K00759: APRT, adenine phosphoribosyltransferase
11 Sobic.006G257600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05609: UCHL3, ubiquitin carboxyl-terminal hydrolase L3
12 Sobic.001G041400 PAPA-1-like conserved region family protein, expressed -
13 Sobic.010G248100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ATEXO70G1, putative, expressed K07195: EXOC7, exocyst complex component 7
14 Sobic.007G194800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@triacylglycerol lipase precursor, putative, expressed K01052: lysosomal acid lipase/cholesteryl ester hydrolase
15 Sobic.001G042800 nudix hydrolase homolog 16(PubMedID : 26465154)@nudix hydrolase homolog 16(PubMedID : 26465154)@hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
16 Sobic.009G122375 - -
17 Sobic.010G250900 cadmium/zinc-transporting ATPase, putative, expressed K01534: Zn2+/Cd2+-exporting ATPase
18 Sobic.004G200400 protein kinase domain containing protein, expressed -
19 Sobic.003G230500 "Sh2(Ortholog in maize:Jiang et al., 2013a)"(PubMedID : 31659869)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
20 Sobic.007G209700 - -


Gene co-expression network
sample Sobic002G049200 Sobic002G049200 Sobic004G109400 Sobic004G109400 Sobic002G049200--Sobic004G109400 Sobic007G018700 Sobic007G018700 Sobic002G049200--Sobic007G018700 Sobic005G050600 Sobic005G050600 Sobic002G049200--Sobic005G050600 Sobic006G139000 Sobic006G139000 Sobic002G049200--Sobic006G139000 Sobic002G059100 Sobic002G059100 Sobic002G049200--Sobic002G059100 Sobic001G059800 Sobic001G059800 Sobic002G049200--Sobic001G059800 Sobic009G237700 Sobic009G237700 Sobic002G049200--Sobic009G237700 Sobic001G297300 Sobic001G297300 Sobic002G049200--Sobic001G297300 Sobic004G311400 Sobic004G311400 Sobic002G049200--Sobic004G311400 Sobic007G064400 Sobic007G064400 Sobic004G109400--Sobic007G064400 Sobic001G234000 Sobic001G234000 Sobic004G109400--Sobic001G234000 Sobic007G127700 Sobic007G127700 Sobic004G109400--Sobic007G127700 Sobic004G109400--Sobic001G297300 Sobic007G069800 Sobic007G069800 Sobic004G109400--Sobic007G069800 Sobic004G090200 Sobic004G090200 Sobic004G109400--Sobic004G090200 Sobic006G279000 Sobic006G279000 Sobic004G109400--Sobic006G279000 Sobic004G109400--Sobic002G059100 Sobic004G187200 Sobic004G187200 Sobic004G109400--Sobic004G187200 Sobic008G156200 Sobic008G156200 Sobic007G018700--Sobic008G156200 Sobic007G018700--Sobic005G050600 Sobic002G390400 Sobic002G390400 Sobic007G018700--Sobic002G390400 Sobic010G207400 Sobic010G207400 Sobic007G018700--Sobic010G207400 Sobic005G072400 Sobic005G072400 Sobic007G018700--Sobic005G072400 Sobic006G061100 Sobic006G061100 Sobic007G018700--Sobic006G061100 Sobic003G412200 Sobic003G412200 Sobic007G018700--Sobic003G412200 Sobic004G200400 Sobic004G200400 Sobic007G018700--Sobic004G200400 Sobic005G131800 Sobic005G131800 Sobic007G018700--Sobic005G131800 Sobic003G004500 Sobic003G004500 Sobic005G050600--Sobic003G004500 Sobic001G033400 Sobic001G033400 Sobic005G050600--Sobic001G033400 Sobic005G050600--Sobic003G412200 Sobic001G041400 Sobic001G041400 Sobic005G050600--Sobic001G041400 Sobic005G050600--Sobic007G018700 Sobic005G032400 Sobic005G032400 Sobic005G050600--Sobic005G032400 Sobic001G042800 Sobic001G042800 Sobic005G050600--Sobic001G042800 Sobic010G250900 Sobic010G250900 Sobic005G050600--Sobic010G250900 Sobic008G160500 Sobic008G160500 Sobic005G050600--Sobic008G160500 Sobic002G058500 Sobic002G058500 Sobic006G139000--Sobic002G058500 Sobic001G417600 Sobic001G417600 Sobic006G139000--Sobic001G417600 Sobic001G280000 Sobic001G280000 Sobic006G139000--Sobic001G280000 Sobic005G019800 Sobic005G019800 Sobic006G139000--Sobic005G019800 Sobic001G395700 Sobic001G395700 Sobic006G139000--Sobic001G395700 Sobic003G226200 Sobic003G226200 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic009G055600 Sobic009G055600 Sobic006G139000--Sobic009G055600 Sobic002G059100--Sobic001G059800 Sobic002G059100--Sobic001G297300 Sobic010G274300 Sobic010G274300 Sobic002G059100--Sobic010G274300 Sobic002G211501 Sobic002G211501 Sobic002G059100--Sobic002G211501 Sobic010G010600 Sobic010G010600 Sobic002G059100--Sobic010G010600 Sobic002G059100--Sobic001G234000 Sobic003G302466 Sobic003G302466 Sobic002G059100--Sobic003G302466 Sobic010G216800 Sobic010G216800 Sobic002G059100--Sobic010G216800 Sobic010G207450 Sobic010G207450 Sobic002G059100--Sobic010G207450 Sobic001G059800--Sobic001G297300 Sobic001G059800--Sobic002G059100 Sobic001G059800--Sobic002G211501 Sobic001G059800--Sobic010G216800 Sobic001G059800--Sobic010G010600 Sobic001G059800--Sobic010G274300 Sobic001G059800--Sobic001G234000 Sobic007G123000 Sobic007G123000 Sobic001G059800--Sobic007G123000 Sobic007G209700 Sobic007G209700 Sobic001G059800--Sobic007G209700 Sobic003G230500 Sobic003G230500 Sobic009G237700--Sobic003G230500 Sobic009G207500 Sobic009G207500 Sobic009G237700--Sobic009G207500 Sobic002G053100 Sobic002G053100 Sobic009G237700--Sobic002G053100 Sobic007G172100 Sobic007G172100 Sobic009G237700--Sobic007G172100 Sobic010G168500 Sobic010G168500 Sobic009G237700--Sobic010G168500 Sobic003G291100 Sobic003G291100 Sobic009G237700--Sobic003G291100 Sobic003G063900 Sobic003G063900 Sobic009G237700--Sobic003G063900 Sobic005G090500 Sobic005G090500 Sobic009G237700--Sobic005G090500 Sobic005G171800 Sobic005G171800 Sobic009G237700--Sobic005G171800 Sobic001G297300--Sobic001G059800 Sobic001G297300--Sobic002G059100 Sobic001G297300--Sobic010G010600 Sobic001G297300--Sobic007G209700 Sobic001G297300--Sobic007G123000 Sobic001G297300--Sobic002G211501 Sobic001G297300--Sobic010G216800 Sobic001G297300--Sobic006G279000 Sobic001G297300--Sobic001G234000 Sobic002G029100 Sobic002G029100 Sobic004G311400--Sobic002G029100 Sobic008G096000 Sobic008G096000 Sobic004G311400--Sobic008G096000 Sobic003G038100 Sobic003G038100 Sobic004G311400--Sobic003G038100 Sobic005G200800 Sobic005G200800 Sobic004G311400--Sobic005G200800 Sobic005G207500 Sobic005G207500 Sobic004G311400--Sobic005G207500 Sobic002G153700 Sobic002G153700 Sobic004G311400--Sobic002G153700 Sobic002G245000 Sobic002G245000 Sobic004G311400--Sobic002G245000 Sobic003G214600 Sobic003G214600 Sobic004G311400--Sobic003G214600 Sobic010G089400 Sobic010G089400 Sobic004G311400--Sobic010G089400
Octagon: transcription factors


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