Gene annotation
Transcriptome id Sobic.004G109400.1
Synonym Sb04g008950
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XZ25
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G47610 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g15010.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019963
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G064400 glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
2 Sobic.001G234000 expressed protein -
3 Sobic.007G127700 DUF581 domain containing protein, expressed -
4 Sobic.001G297300 - -
5 Sobic.007G069800 expressed protein -
6 Sobic.004G090200 OsFBX46 - F-box domain containing protein, expressed -
7 Sobic.006G279000 expressed protein -
8 Sobic.002G059100 OsFBX239 - F-box domain containing protein, expressed -
9 Sobic.004G187200 ICE-like protease p20 domain containing protein, putative, expressed -
10 Sobic.001G330600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
11 Sobic.005G052100 expressed protein -
12 Sobic.002G147500 early fruit mRNA, putative, expressed -
13 Sobic.001G112350 - -
14 Sobic.001G059800 cupin domain containing protein, expressed -
15 Sobic.004G090300 OsFBX46 - F-box domain containing protein, expressed -
16 Sobic.009G013200 - -
17 Sobic.002G211400 OsFBL33 - F-box domain and LRR containing protein, expressed -
18 Sobic.003G363300 hydrolase, alpha/beta fold family protein, putative, expressed -
19 Sobic.009G051201 - -
20 Sobic.007G156400 Up-reguralion under drought(PubMedID : 24916767)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase


Gene co-expression network
sample Sobic004G109400 Sobic004G109400 Sobic007G064400 Sobic007G064400 Sobic004G109400--Sobic007G064400 Sobic001G234000 Sobic001G234000 Sobic004G109400--Sobic001G234000 Sobic007G127700 Sobic007G127700 Sobic004G109400--Sobic007G127700 Sobic001G297300 Sobic001G297300 Sobic004G109400--Sobic001G297300 Sobic007G069800 Sobic007G069800 Sobic004G109400--Sobic007G069800 Sobic004G090200 Sobic004G090200 Sobic004G109400--Sobic004G090200 Sobic006G279000 Sobic006G279000 Sobic004G109400--Sobic006G279000 Sobic002G059100 Sobic002G059100 Sobic004G109400--Sobic002G059100 Sobic004G187200 Sobic004G187200 Sobic004G109400--Sobic004G187200 Sobic007G064400--Sobic001G234000 Sobic007G064400--Sobic004G187200 Sobic004G090300 Sobic004G090300 Sobic007G064400--Sobic004G090300 Sobic007G064400--Sobic006G279000 Sobic007G064400--Sobic004G090200 Sobic007G064400--Sobic002G059100 Sobic007G156400 Sobic007G156400 Sobic007G064400--Sobic007G156400 Sobic007G064400--Sobic001G297300 Sobic002G147500 Sobic002G147500 Sobic007G064400--Sobic002G147500 Sobic002G211501 Sobic002G211501 Sobic001G234000--Sobic002G211501 Sobic001G234000--Sobic004G090300 Sobic001G234000--Sobic007G064400 Sobic001G234000--Sobic006G279000 Sobic001G234000--Sobic004G187200 Sobic002G291132 Sobic002G291132 Sobic001G234000--Sobic002G291132 Sobic001G530400 Sobic001G530400 Sobic001G234000--Sobic001G530400 Sobic001G234000--Sobic002G147500 Sobic010G274300 Sobic010G274300 Sobic001G234000--Sobic010G274300 Sobic007G127700--Sobic007G069800 Sobic009G051201 Sobic009G051201 Sobic007G127700--Sobic009G051201 Sobic005G052100 Sobic005G052100 Sobic007G127700--Sobic005G052100 Sobic002G069800 Sobic002G069800 Sobic007G127700--Sobic002G069800 Sobic003G213100 Sobic003G213100 Sobic007G127700--Sobic003G213100 Sobic001G112350 Sobic001G112350 Sobic007G127700--Sobic001G112350 Sobic009G013200 Sobic009G013200 Sobic007G127700--Sobic009G013200 Sobic005G003100 Sobic005G003100 Sobic007G127700--Sobic005G003100 Sobic001G330600 Sobic001G330600 Sobic007G127700--Sobic001G330600 Sobic001G059800 Sobic001G059800 Sobic001G297300--Sobic001G059800 Sobic001G297300--Sobic002G059100 Sobic010G010600 Sobic010G010600 Sobic001G297300--Sobic010G010600 Sobic007G209700 Sobic007G209700 Sobic001G297300--Sobic007G209700 Sobic007G123000 Sobic007G123000 Sobic001G297300--Sobic007G123000 Sobic001G297300--Sobic002G211501 Sobic010G216800 Sobic010G216800 Sobic001G297300--Sobic010G216800 Sobic001G297300--Sobic006G279000 Sobic001G297300--Sobic001G234000 Sobic007G069800--Sobic005G052100 Sobic007G069800--Sobic001G112350 Sobic007G069800--Sobic007G127700 Sobic007G069800--Sobic002G069800 Sobic008G143400 Sobic008G143400 Sobic007G069800--Sobic008G143400 Sobic007G069800--Sobic005G003100 Sobic007G069800--Sobic009G051201 Sobic007G069800--Sobic003G213100 Sobic007G069800--Sobic009G013200 Sobic004G090200--Sobic001G330600 Sobic004G090200--Sobic002G147500 Sobic004G090200--Sobic005G052100 Sobic004G090200--Sobic004G187200 Sobic004G090200--Sobic006G279000 Sobic004G090200--Sobic009G013200 Sobic004G090200--Sobic001G112350 Sobic004G090200--Sobic007G069800 Sobic004G090200--Sobic004G090300 Sobic006G279000--Sobic002G147500 Sobic006G279000--Sobic004G090300 Sobic006G279000--Sobic001G330600 Sobic006G036201 Sobic006G036201 Sobic006G279000--Sobic006G036201 Sobic005G074900 Sobic005G074900 Sobic006G279000--Sobic005G074900 Sobic003G363300 Sobic003G363300 Sobic006G279000--Sobic003G363300 Sobic005G075000 Sobic005G075000 Sobic006G279000--Sobic005G075000 Sobic006G271400 Sobic006G271400 Sobic006G279000--Sobic006G271400 Sobic006G279000--Sobic001G234000 Sobic002G059100--Sobic001G059800 Sobic002G059100--Sobic001G297300 Sobic002G059100--Sobic010G274300 Sobic002G059100--Sobic002G211501 Sobic002G059100--Sobic010G010600 Sobic002G059100--Sobic001G234000 Sobic003G302466 Sobic003G302466 Sobic002G059100--Sobic003G302466 Sobic002G059100--Sobic010G216800 Sobic010G207450 Sobic010G207450 Sobic002G059100--Sobic010G207450 Sobic004G187200--Sobic001G234000 Sobic004G187200--Sobic004G090300 Sobic009G029900 Sobic009G029900 Sobic004G187200--Sobic009G029900 Sobic004G187200--Sobic004G090200 Sobic004G187200--Sobic002G147500 Sobic004G187200--Sobic006G279000 Sobic004G187200--Sobic007G064400 Sobic004G187200--Sobic001G330600 Sobic004G187200--Sobic001G530400
Octagon: transcription factors


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