Gene annotation
Transcriptome id Sobic.007G020500.2,Sobic.007G020500.5,Sobic.007G020500.6,Sobic.007G020500.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6PF40
Pfam PF15963
Panther DB PTHR22929
NCBI CDD -
KEGG Orthology K15198; BDP1, transcription factor TFIIIB component B''
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G39160 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os03g62388.1 : expressed protein
MaizeGDB (Corn) Zm00025a040301 , Zm00025a021407 , Zm00025a021408 , Zm00025a021409
Brachypodium -
Barley -
Wheat TraesCS1D02G314900 , TraesCS1D02G314900 , TraesCS1B02G326700 , TraesCS1B02G326700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G169633 - -
2 Sobic.007G202900 ZOS8-09 - C2H2 zinc finger protein, expressed -
3 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
4 Sobic.002G173000 disease resistance protein RGA2, putative, expressed -
5 Sobic.004G314000 expressed protein -
6 Sobic.002G161900 NBS-LRR disease resistance protein, putative, expressed -
7 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
8 Sobic.004G359800 inositol-1-monophosphatase, putative, expressed -
9 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
10 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
11 Sobic.003G401600 expressed protein K12879: THO complex subunit 2
12 Sobic.005G032800 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
13 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
14 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
15 Sobic.003G252200 DDT, putative, expressed -
16 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
17 Sobic.006G182900 expressed protein -
18 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
19 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
20 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1


Gene co-expression network
sample Sobic007G020500 Sobic007G020500 Sobic002G169633 Sobic002G169633 Sobic007G020500--Sobic002G169633 Sobic007G202900 Sobic007G202900 Sobic007G020500--Sobic007G202900 Sobic001G072500 Sobic001G072500 Sobic007G020500--Sobic001G072500 Sobic002G173000 Sobic002G173000 Sobic007G020500--Sobic002G173000 Sobic004G314000 Sobic004G314000 Sobic007G020500--Sobic004G314000 Sobic002G161900 Sobic002G161900 Sobic007G020500--Sobic002G161900 Sobic003G280800 Sobic003G280800 Sobic007G020500--Sobic003G280800 Sobic004G359800 Sobic004G359800 Sobic007G020500--Sobic004G359800 Sobic010G139000 Sobic010G139000 Sobic007G020500--Sobic010G139000 Sobic002G169633--Sobic001G072500 Sobic005G032800 Sobic005G032800 Sobic002G169633--Sobic005G032800 Sobic002G169633--Sobic004G359800 Sobic004G263600 Sobic004G263600 Sobic002G169633--Sobic004G263600 Sobic004G174200 Sobic004G174200 Sobic002G169633--Sobic004G174200 Sobic010G239600 Sobic010G239600 Sobic002G169633--Sobic010G239600 Sobic002G169633--Sobic007G020500 Sobic006G131500 Sobic006G131500 Sobic002G169633--Sobic006G131500 Sobic007G193700 Sobic007G193700 Sobic002G169633--Sobic007G193700 Sobic007G202900--Sobic004G314000 Sobic007G202900--Sobic010G139000 Sobic002G397500 Sobic002G397500 Sobic007G202900--Sobic002G397500 Sobic005G008800 Sobic005G008800 Sobic007G202900--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic007G202900--Sobic005G112300 Sobic002G309600 Sobic002G309600 Sobic007G202900--Sobic002G309600 Sobic001G280900 Sobic001G280900 Sobic007G202900--Sobic001G280900 Sobic010G206900 Sobic010G206900 Sobic007G202900--Sobic010G206900 Sobic008G009700 Sobic008G009700 Sobic007G202900--Sobic008G009700 Sobic001G072500--Sobic002G169633 Sobic003G401600 Sobic003G401600 Sobic001G072500--Sobic003G401600 Sobic001G072500--Sobic004G263600 Sobic004G209600 Sobic004G209600 Sobic001G072500--Sobic004G209600 Sobic002G316600 Sobic002G316600 Sobic001G072500--Sobic002G316600 Sobic001G072500--Sobic004G314000 Sobic001G072500--Sobic006G131500 Sobic001G072500--Sobic010G206900 Sobic001G072500--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic002G173000--Sobic006G182900 Sobic001G214300 Sobic001G214300 Sobic002G173000--Sobic001G214300 Sobic002G173000--Sobic005G032800 Sobic006G021250 Sobic006G021250 Sobic002G173000--Sobic006G021250 Sobic010G248700 Sobic010G248700 Sobic002G173000--Sobic010G248700 Sobic008G027000 Sobic008G027000 Sobic002G173000--Sobic008G027000 Sobic001G287201 Sobic001G287201 Sobic002G173000--Sobic001G287201 Sobic001G318432 Sobic001G318432 Sobic002G173000--Sobic001G318432 Sobic001G474600 Sobic001G474600 Sobic002G173000--Sobic001G474600 Sobic004G314000--Sobic010G139000 Sobic004G314000--Sobic005G008800 Sobic004G314000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic004G314000--Sobic010G279450 Sobic004G242400 Sobic004G242400 Sobic004G314000--Sobic004G242400 Sobic004G314000--Sobic010G206900 Sobic004G314000--Sobic003G401600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic005G019600 Sobic005G019600 Sobic002G161900--Sobic005G019600 Sobic010G112000 Sobic010G112000 Sobic002G161900--Sobic010G112000 Sobic002G161900--Sobic002G173000 Sobic002G161900--Sobic005G032800 Sobic002G161900--Sobic001G474600 Sobic009G221000 Sobic009G221000 Sobic002G161900--Sobic009G221000 Sobic008G016300 Sobic008G016300 Sobic002G161900--Sobic008G016300 Sobic002G161900--Sobic001G280900 Sobic002G161900--Sobic007G020500 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic002G134200 Sobic002G134200 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic007G116200 Sobic007G116200 Sobic004G359800--Sobic007G116200 Sobic004G359800--Sobic002G169633 Sobic003G138500 Sobic003G138500 Sobic004G359800--Sobic003G138500 Sobic004G359800--Sobic002G134200 Sobic004G359800--Sobic003G280800 Sobic004G359800--Sobic010G139000 Sobic004G359800--Sobic006G182900 Sobic010G176550 Sobic010G176550 Sobic004G359800--Sobic010G176550 Sobic002G127550 Sobic002G127550 Sobic004G359800--Sobic002G127550 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G139000--Sobic010G279450 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800
Octagon: transcription factors


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