Gene annotation
Transcriptome id Sobic.003G252200.3,Sobic.003G252200.2,Sobic.003G252200.4
Synonym
Functional annotation DDT, putative, expressed
UniProt A0A1W0VYV1 , A0A1W0VQU2 , C6JS92 , A0A1B6Q589 , A0A1W0VYW7 , A0A120GUU9
Pfam PF15613 PF15612 PF15614 PF02791 PF05066 PF15613 PF15612 PF15614 PF02791 PF05066 PF00046 PF15613 PF15612 PF00046 PF05066 PF02791
Panther DB PTHR36968 PTHR36968:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0006351transcription, DNA-templated GO:0006355regulation of transcription, DNA-templated GO:0006351transcription, DNA-templated GO:0006355regulation of transcription, DNA-templated GO:0006351transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G44180 : Homeodomain-like transcriptional regulator
RAP-DB (Rice) LOC_Os01g48180.1,LOC_Os05g48820.1 : DDT domain containing protein, putative, expressed,DDT, putative, expressed
MaizeGDB (Corn) Zm00025a038775 , Zm00025a028098 , Zm00025a028099 , Zm00025a028095 , Zm00025a056168 , Zm00025a036600
Brachypodium KQK04896 , KQK09134
Barley HORVU3Hr1G061660.4 , HORVU3Hr1G061660.5 , HORVU3Hr1G061660.7 , HORVU3Hr1G061660.1 , HORVU3Hr1G061660.2 , HORVU3Hr1G061660.3 , HORVU3Hr1G061660.8 , HORVU3Hr1G061660.9 , HORVU1Hr1G087180.7 , HORVU1Hr1G087180.6 , HORVU1Hr1G087180.8 , HORVU3Hr1G061660.14 , HORVU3Hr1G061660.12 , HORVU3Hr1G061660.13 , HORVU3Hr1G061660.10 , HORVU3Hr1G061660.11 , HORVU1Hr1G087180.5 , HORVU1Hr1G087180.4 , HORVU1Hr1G087180.3 , HORVU1Hr1G087180.2 , HORVU1Hr1G087180.1
Wheat TraesCS3A02G245700 , TraesCS3A02G245700 , TraesCS3D02G245800 , TraesCS3D02G245800 , TraesCS3D02G245800 , TraesCS3B02G273900 , TraesCS3B02G273900 , TraesCS3B02G273900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
2 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
3 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
4 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
5 Sobic.005G079025 - -
6 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
7 Sobic.001G287201 - -
8 Sobic.006G021250 - -
9 Sobic.002G173000 disease resistance protein RGA2, putative, expressed -
10 Sobic.005G090401 - -
11 Sobic.006G182900 expressed protein -
12 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
13 Sobic.005G159000 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed -
14 Sobic.002G169633 - -
15 Sobic.005G110200 - -
16 Sobic.005G032800 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
17 Sobic.003G113200 5-nucleotidase domain-containing protein, putative, expressed -
18 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
19 Sobic.004G314000 expressed protein -
20 Sobic.007G002300 protein kinase family protein, putative, expressed K17535: serine/threonine-protein kinase TNNI3K


Gene co-expression network
sample Sobic003G252200 Sobic003G252200 Sobic003G280800 Sobic003G280800 Sobic003G252200--Sobic003G280800 Sobic002G309600 Sobic002G309600 Sobic003G252200--Sobic002G309600 Sobic002G134200 Sobic002G134200 Sobic003G252200--Sobic002G134200 Sobic001G474600 Sobic001G474600 Sobic003G252200--Sobic001G474600 Sobic005G079025 Sobic005G079025 Sobic003G252200--Sobic005G079025 Sobic001G071400 Sobic001G071400 Sobic003G252200--Sobic001G071400 Sobic001G287201 Sobic001G287201 Sobic003G252200--Sobic001G287201 Sobic006G021250 Sobic006G021250 Sobic003G252200--Sobic006G021250 Sobic002G173000 Sobic002G173000 Sobic003G252200--Sobic002G173000 Sobic003G280800--Sobic002G309600 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic002G309600--Sobic003G280800 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic002G309600--Sobic001G071400 Sobic005G112300 Sobic005G112300 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900 Sobic001G474600--Sobic003G280800 Sobic009G166300 Sobic009G166300 Sobic001G474600--Sobic009G166300 Sobic001G125200 Sobic001G125200 Sobic001G474600--Sobic001G125200 Sobic001G474600--Sobic003G372700 Sobic007G217000 Sobic007G217000 Sobic001G474600--Sobic007G217000 Sobic007G096000 Sobic007G096000 Sobic001G474600--Sobic007G096000 Sobic007G207000 Sobic007G207000 Sobic001G474600--Sobic007G207000 Sobic001G474600--Sobic009G191000 Sobic001G241200 Sobic001G241200 Sobic001G474600--Sobic001G241200 Sobic005G079025--Sobic006G021250 Sobic005G079025--Sobic006G209850 Sobic005G079025--Sobic003G280800 Sobic002G336800 Sobic002G336800 Sobic005G079025--Sobic002G336800 Sobic001G111900 Sobic001G111900 Sobic005G079025--Sobic001G111900 Sobic002G031400 Sobic002G031400 Sobic005G079025--Sobic002G031400 Sobic001G274200 Sobic001G274200 Sobic005G079025--Sobic001G274200 Sobic009G138800 Sobic009G138800 Sobic005G079025--Sobic009G138800 Sobic008G011100 Sobic008G011100 Sobic005G079025--Sobic008G011100 Sobic001G071400--Sobic002G134200 Sobic001G071400--Sobic002G309600 Sobic001G071400--Sobic003G280800 Sobic001G071400--Sobic008G047800 Sobic001G071400--Sobic009G191000 Sobic001G219600 Sobic001G219600 Sobic001G071400--Sobic001G219600 Sobic001G071400--Sobic005G112300 Sobic002G315200 Sobic002G315200 Sobic001G071400--Sobic002G315200 Sobic001G071400--Sobic002G008900 Sobic003G429650 Sobic003G429650 Sobic001G287201--Sobic003G429650 Sobic001G287201--Sobic003G280800 Sobic002G243900 Sobic002G243900 Sobic001G287201--Sobic002G243900 Sobic006G048500 Sobic006G048500 Sobic001G287201--Sobic006G048500 Sobic004G007100 Sobic004G007100 Sobic001G287201--Sobic004G007100 Sobic006G182900 Sobic006G182900 Sobic001G287201--Sobic006G182900 Sobic001G287201--Sobic002G006900 Sobic007G096600 Sobic007G096600 Sobic001G287201--Sobic007G096600 Sobic009G104201 Sobic009G104201 Sobic001G287201--Sobic009G104201 Sobic006G021250--Sobic006G209850 Sobic006G021250--Sobic003G280800 Sobic008G024600 Sobic008G024600 Sobic006G021250--Sobic008G024600 Sobic006G021250--Sobic002G173000 Sobic003G113200 Sobic003G113200 Sobic006G021250--Sobic003G113200 Sobic006G021250--Sobic005G079025 Sobic005G032800 Sobic005G032800 Sobic006G021250--Sobic005G032800 Sobic006G128900 Sobic006G128900 Sobic006G021250--Sobic006G128900 Sobic005G077466 Sobic005G077466 Sobic006G021250--Sobic005G077466 Sobic002G173000--Sobic006G182900 Sobic001G214300 Sobic001G214300 Sobic002G173000--Sobic001G214300 Sobic002G173000--Sobic005G032800 Sobic002G173000--Sobic006G021250 Sobic010G248700 Sobic010G248700 Sobic002G173000--Sobic010G248700 Sobic008G027000 Sobic008G027000 Sobic002G173000--Sobic008G027000 Sobic002G173000--Sobic001G287201 Sobic001G318432 Sobic001G318432 Sobic002G173000--Sobic001G318432 Sobic002G173000--Sobic001G474600
Octagon: transcription factors


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