Gene annotation
Transcriptome id Sobic.002G181400.1
Synonym Sb02g022980, AtTHO6, DWA1, THO6
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XAP5
Pfam PF00400
Panther DB PTHR22847
NCBI CDD KOG0649; WD40 repeat protein
KEGG Orthology K13175; THO complex subunit 6
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G19430 : DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1
RAP-DB (Rice) LOC_Os09g19900.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046677
Brachypodium KQJ89979 , KQJ89978 , KQJ89988 , KQJ89989 , KQJ89980 , KQJ89981 , KQJ89982 , KQJ89983 , KQJ89984 , KQJ89985 , KQJ89987 , KQJ89991 , KQJ89990
Barley -
Wheat TraesCS5A02G195000 , TraesCS5A02G195000 , TraesCS5B02G190400 , TraesCS5D02G198200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G083700 RING-H2 finger protein, putative, expressed -
2 Sobic.001G032550 - K15032: mTERF domain-containing protein, mitochondrial
3 Sobic.006G157400 syntaxin-18, putative, expressed K08492: syntaxin 18
4 Sobic.002G303200 - -
5 Sobic.007G016400 expressed protein -
6 Sobic.003G398500 Uncharacterized ACR, COG1565 containing protein, putative, expressed -
7 Sobic.002G430400 - -
8 Sobic.002G037900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G490700 pentatricopeptide, putative, expressed -
10 Sobic.009G042500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.007G005200 PHD-finger domain containing protein, expressed -
12 Sobic.003G433600 pentatricopeptide, putative, expressed -
13 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.010G056100 HIRAN domain containing protein, putative, expressed K15363: FAN1, fanconi-associated nuclease 1
15 Sobic.006G141100 OsFBO6 - F-box and other domain containing protein, expressed -
16 Sobic.008G149200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
17 Sobic.003G124000 DNA methyltransferase protein, putative, expressed -
18 Sobic.006G213200 expressed protein -
19 Sobic.003G229400 CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed -
20 Sobic.009G038600 GA20663-PA, putative, expressed -


Gene co-expression network
sample Sobic002G181400 Sobic002G181400 Sobic008G083700 Sobic008G083700 Sobic002G181400--Sobic008G083700 Sobic001G032550 Sobic001G032550 Sobic002G181400--Sobic001G032550 Sobic006G157400 Sobic006G157400 Sobic002G181400--Sobic006G157400 Sobic002G303200 Sobic002G303200 Sobic002G181400--Sobic002G303200 Sobic007G016400 Sobic007G016400 Sobic002G181400--Sobic007G016400 Sobic003G398500 Sobic003G398500 Sobic002G181400--Sobic003G398500 Sobic002G430400 Sobic002G430400 Sobic002G181400--Sobic002G430400 Sobic002G037900 Sobic002G037900 Sobic002G181400--Sobic002G037900 Sobic001G490700 Sobic001G490700 Sobic002G181400--Sobic001G490700 Sobic008G083700--Sobic002G181400 Sobic006G260000 Sobic006G260000 Sobic008G083700--Sobic006G260000 Sobic003G109000 Sobic003G109000 Sobic008G083700--Sobic003G109000 Sobic002G176500 Sobic002G176500 Sobic008G083700--Sobic002G176500 Sobic001G377900 Sobic001G377900 Sobic008G083700--Sobic001G377900 Sobic004G046001 Sobic004G046001 Sobic008G083700--Sobic004G046001 Sobic001G105400 Sobic001G105400 Sobic008G083700--Sobic001G105400 Sobic005G005000 Sobic005G005000 Sobic008G083700--Sobic005G005000 Sobic004G175000 Sobic004G175000 Sobic008G083700--Sobic004G175000 Sobic002G306500 Sobic002G306500 Sobic001G032550--Sobic002G306500 Sobic003G124000 Sobic003G124000 Sobic001G032550--Sobic003G124000 Sobic001G032550--Sobic002G181400 Sobic009G166400 Sobic009G166400 Sobic001G032550--Sobic009G166400 Sobic003G107000 Sobic003G107000 Sobic001G032550--Sobic003G107000 Sobic009G166650 Sobic009G166650 Sobic001G032550--Sobic009G166650 Sobic006G234500 Sobic006G234500 Sobic001G032550--Sobic006G234500 Sobic009G241966 Sobic009G241966 Sobic001G032550--Sobic009G241966 Sobic003G202700 Sobic003G202700 Sobic001G032550--Sobic003G202700 Sobic008G150200 Sobic008G150200 Sobic006G157400--Sobic008G150200 Sobic003G323900 Sobic003G323900 Sobic006G157400--Sobic003G323900 Sobic004G012000 Sobic004G012000 Sobic006G157400--Sobic004G012000 Sobic001G192900 Sobic001G192900 Sobic006G157400--Sobic001G192900 Sobic006G055100 Sobic006G055100 Sobic006G157400--Sobic006G055100 Sobic010G104200 Sobic010G104200 Sobic006G157400--Sobic010G104200 Sobic002G140800 Sobic002G140800 Sobic006G157400--Sobic002G140800 Sobic005G149000 Sobic005G149000 Sobic006G157400--Sobic005G149000 Sobic005G110427 Sobic005G110427 Sobic006G157400--Sobic005G110427 Sobic006G084701 Sobic006G084701 Sobic002G303200--Sobic006G084701 Sobic007G223100 Sobic007G223100 Sobic002G303200--Sobic007G223100 Sobic004G251701 Sobic004G251701 Sobic002G303200--Sobic004G251701 Sobic001G088450 Sobic001G088450 Sobic002G303200--Sobic001G088450 Sobic001G313150 Sobic001G313150 Sobic002G303200--Sobic001G313150 Sobic010G276500 Sobic010G276500 Sobic002G303200--Sobic010G276500 Sobic003G214850 Sobic003G214850 Sobic002G303200--Sobic003G214850 Sobic005G151000 Sobic005G151000 Sobic002G303200--Sobic005G151000 Sobic004G155700 Sobic004G155700 Sobic002G303200--Sobic004G155700 Sobic010G249900 Sobic010G249900 Sobic007G016400--Sobic010G249900 Sobic006G102200 Sobic006G102200 Sobic007G016400--Sobic006G102200 Sobic006G244200 Sobic006G244200 Sobic007G016400--Sobic006G244200 Sobic004G145550 Sobic004G145550 Sobic007G016400--Sobic004G145550 Sobic006G183500 Sobic006G183500 Sobic007G016400--Sobic006G183500 Sobic002G375200 Sobic002G375200 Sobic007G016400--Sobic002G375200 Sobic003G047400 Sobic003G047400 Sobic007G016400--Sobic003G047400 Sobic010G093200 Sobic010G093200 Sobic007G016400--Sobic010G093200 Sobic005G106700 Sobic005G106700 Sobic007G016400--Sobic005G106700 Sobic001G411500 Sobic001G411500 Sobic003G398500--Sobic001G411500 Sobic004G208800 Sobic004G208800 Sobic003G398500--Sobic004G208800 Sobic003G398500--Sobic010G249900 Sobic007G107800 Sobic007G107800 Sobic003G398500--Sobic007G107800 Sobic005G100500 Sobic005G100500 Sobic003G398500--Sobic005G100500 Sobic001G444200 Sobic001G444200 Sobic003G398500--Sobic001G444200 Sobic008G014400 Sobic008G014400 Sobic003G398500--Sobic008G014400 Sobic004G312000 Sobic004G312000 Sobic003G398500--Sobic004G312000 Sobic004G053100 Sobic004G053100 Sobic003G398500--Sobic004G053100 Sobic002G430400--Sobic009G241966 Sobic009G038600 Sobic009G038600 Sobic002G430400--Sobic009G038600 Sobic002G430400--Sobic002G181400 Sobic006G213200 Sobic006G213200 Sobic002G430400--Sobic006G213200 Sobic003G213800 Sobic003G213800 Sobic002G430400--Sobic003G213800 Sobic002G430400--Sobic004G046001 Sobic004G250100 Sobic004G250100 Sobic002G430400--Sobic004G250100 Sobic006G197500 Sobic006G197500 Sobic002G430400--Sobic006G197500 Sobic001G261537 Sobic001G261537 Sobic002G430400--Sobic001G261537 Sobic002G358900 Sobic002G358900 Sobic002G037900--Sobic002G358900 Sobic003G089900 Sobic003G089900 Sobic002G037900--Sobic003G089900 Sobic005G110550 Sobic005G110550 Sobic002G037900--Sobic005G110550 Sobic010G046200 Sobic010G046200 Sobic002G037900--Sobic010G046200 Sobic002G037900--Sobic005G151000 Sobic002G037900--Sobic006G084701 Sobic004G199400 Sobic004G199400 Sobic002G037900--Sobic004G199400 Sobic009G096566 Sobic009G096566 Sobic002G037900--Sobic009G096566 Sobic002G095800 Sobic002G095800 Sobic002G037900--Sobic002G095800 Sobic008G178200 Sobic008G178200 Sobic001G490700--Sobic008G178200 Sobic008G178300 Sobic008G178300 Sobic001G490700--Sobic008G178300 Sobic001G490700--Sobic004G250100 Sobic007G179500 Sobic007G179500 Sobic001G490700--Sobic007G179500 Sobic003G433600 Sobic003G433600 Sobic001G490700--Sobic003G433600 Sobic003G203100 Sobic003G203100 Sobic001G490700--Sobic003G203100 Sobic001G490700--Sobic006G197500 Sobic005G108300 Sobic005G108300 Sobic001G490700--Sobic005G108300 Sobic004G033300 Sobic004G033300 Sobic001G490700--Sobic004G033300
Octagon: transcription factors


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