Gene annotation
Transcriptome id Sobic.006G135200.1
Synonym Sb06g021490
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5REE1
Pfam -
Panther DB PTHR37911 PTHR37911:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14900 : -
RAP-DB (Rice) LOC_Os04g42030.1 : expressed protein
MaizeGDB (Corn) Zm00025a010806
Brachypodium KQJ83377
Barley HORVU2Hr1G085910.8 , HORVU2Hr1G085910.4 , HORVU2Hr1G085910.7 , HORVU2Hr1G085910.6 , HORVU2Hr1G085910.3
Wheat TraesCS2A02G356000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
2 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
3 Sobic.003G342700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
4 Sobic.005G169600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
5 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
6 Sobic.005G009300 expressed protein -
7 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1
8 Sobic.003G249100 HMG1/2, putative, expressed -
9 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
10 Sobic.001G394700 fip1 motif family protein, expressed -
11 Sobic.001G426400 expressed protein -
12 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
13 Sobic.003G291300 RNA methyltransferase, TrmH family protein, putative, expressed K15507: MRM1, 21S rRNA (GM2251-2'-O)-methyltransferase
14 Sobic.004G098000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G297500 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
16 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
17 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
18 Sobic.009G041600 CRS1/YhbY domain containing protein, putative, expressed -
19 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
20 Sobic.003G381400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic006G135200 Sobic006G135200 Sobic002G404900 Sobic002G404900 Sobic006G135200--Sobic002G404900 Sobic001G395300 Sobic001G395300 Sobic006G135200--Sobic001G395300 Sobic003G342700 Sobic003G342700 Sobic006G135200--Sobic003G342700 Sobic005G169600 Sobic005G169600 Sobic006G135200--Sobic005G169600 Sobic009G238100 Sobic009G238100 Sobic006G135200--Sobic009G238100 Sobic005G009300 Sobic005G009300 Sobic006G135200--Sobic005G009300 Sobic008G022701 Sobic008G022701 Sobic006G135200--Sobic008G022701 Sobic003G249100 Sobic003G249100 Sobic006G135200--Sobic003G249100 Sobic001G161400 Sobic001G161400 Sobic006G135200--Sobic001G161400 Sobic006G237100 Sobic006G237100 Sobic002G404900--Sobic006G237100 Sobic009G137000 Sobic009G137000 Sobic002G404900--Sobic009G137000 Sobic002G404900--Sobic001G395300 Sobic001G437200 Sobic001G437200 Sobic002G404900--Sobic001G437200 Sobic009G036300 Sobic009G036300 Sobic002G404900--Sobic009G036300 Sobic002G404900--Sobic001G161400 Sobic002G404900--Sobic005G009300 Sobic001G445200 Sobic001G445200 Sobic002G404900--Sobic001G445200 Sobic006G204100 Sobic006G204100 Sobic002G404900--Sobic006G204100 Sobic001G395300--Sobic009G137000 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic002G140000 Sobic002G140000 Sobic001G395300--Sobic002G140000 Sobic001G395300--Sobic006G204100 Sobic007G116100 Sobic007G116100 Sobic001G395300--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic001G395300--Sobic010G027200 Sobic003G342700--Sobic002G404900 Sobic003G342700--Sobic005G169600 Sobic009G234200 Sobic009G234200 Sobic003G342700--Sobic009G234200 Sobic002G038300 Sobic002G038300 Sobic003G342700--Sobic002G038300 Sobic003G342700--Sobic006G204100 Sobic003G342700--Sobic006G237100 Sobic003G342700--Sobic001G161400 Sobic003G291300 Sobic003G291300 Sobic003G342700--Sobic003G291300 Sobic008G072300 Sobic008G072300 Sobic003G342700--Sobic008G072300 Sobic005G169600--Sobic009G238100 Sobic005G169600--Sobic006G204100 Sobic005G169600--Sobic009G036300 Sobic007G227600 Sobic007G227600 Sobic005G169600--Sobic007G227600 Sobic005G169600--Sobic003G342700 Sobic005G169600--Sobic002G038300 Sobic005G169600--Sobic002G404900 Sobic005G169600--Sobic009G234200 Sobic003G030400 Sobic003G030400 Sobic005G169600--Sobic003G030400 Sobic008G148400 Sobic008G148400 Sobic009G238100--Sobic008G148400 Sobic001G426400 Sobic001G426400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic009G238100--Sobic005G169600 Sobic009G238100--Sobic009G036300 Sobic009G238100--Sobic003G030400 Sobic009G238100--Sobic007G227600 Sobic009G238100--Sobic002G038300 Sobic005G009300--Sobic001G445200 Sobic005G009300--Sobic002G404900 Sobic003G162800 Sobic003G162800 Sobic005G009300--Sobic003G162800 Sobic005G009300--Sobic006G237100 Sobic002G409900 Sobic002G409900 Sobic005G009300--Sobic002G409900 Sobic005G009300--Sobic009G137000 Sobic005G009300--Sobic001G395300 Sobic003G170200 Sobic003G170200 Sobic005G009300--Sobic003G170200 Sobic003G283800 Sobic003G283800 Sobic005G009300--Sobic003G283800 Sobic003G332900 Sobic003G332900 Sobic008G022701--Sobic003G332900 Sobic001G008000 Sobic001G008000 Sobic008G022701--Sobic001G008000 Sobic001G119600 Sobic001G119600 Sobic008G022701--Sobic001G119600 Sobic002G052400 Sobic002G052400 Sobic008G022701--Sobic002G052400 Sobic007G145100 Sobic007G145100 Sobic008G022701--Sobic007G145100 Sobic005G100900 Sobic005G100900 Sobic008G022701--Sobic005G100900 Sobic001G157300 Sobic001G157300 Sobic008G022701--Sobic001G157300 Sobic001G502600 Sobic001G502600 Sobic008G022701--Sobic001G502600 Sobic004G027300 Sobic004G027300 Sobic008G022701--Sobic004G027300 Sobic003G249100--Sobic009G238100 Sobic003G249100--Sobic003G332900 Sobic001G341800 Sobic001G341800 Sobic003G249100--Sobic001G341800 Sobic003G249100--Sobic002G038300 Sobic003G249100--Sobic002G404900 Sobic003G249100--Sobic009G036300 Sobic003G249100--Sobic001G161400 Sobic001G202500 Sobic001G202500 Sobic003G249100--Sobic001G202500 Sobic003G068600 Sobic003G068600 Sobic003G249100--Sobic003G068600 Sobic001G161400--Sobic006G237100 Sobic003G039300 Sobic003G039300 Sobic001G161400--Sobic003G039300 Sobic001G161400--Sobic006G204100 Sobic003G330100 Sobic003G330100 Sobic001G161400--Sobic003G330100 Sobic001G161400--Sobic002G404900 Sobic003G444500 Sobic003G444500 Sobic001G161400--Sobic003G444500 Sobic001G161400--Sobic009G234200 Sobic003G084500 Sobic003G084500 Sobic001G161400--Sobic003G084500 Sobic003G286300 Sobic003G286300 Sobic001G161400--Sobic003G286300
Octagon: transcription factors


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