Gene annotation
Transcriptome id Sobic.005G182300.2
Synonym Sb05g024080
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide repeat domain containing protein, putative, expressed
UniProt A0A1Z5RK99
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF325
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19890 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os11g39360.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a029415
Brachypodium -
Barley HORVU7Hr1G028150.9 , HORVU7Hr1G028150.16 , HORVU7Hr1G028150.11 , HORVU7Hr1G028150.10 , HORVU7Hr1G028150.13 , HORVU7Hr1G028150.12 , HORVU7Hr1G028150.15 , HORVU7Hr1G028150.14 , HORVU7Hr1G028150.17 , HORVU7Hr1G028150.5 , HORVU7Hr1G028150.4 , HORVU7Hr1G028150.7 , HORVU7Hr1G028150.6 , HORVU7Hr1G028150.1 , HORVU7Hr1G028150.3 , HORVU7Hr1G028150.2 , HORVU7Hr1G028150.8
Wheat TraesCS7D02G134400
Populus -


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cDNA sequences
Sobic.005G182300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.010G244400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
3 Sobic.003G327300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G357900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@strictosidine synthase, putative, expressed -
5 Sobic.001G105400 PPR repeat containing protein, expressed -
6 Sobic.009G170050 - -
7 Sobic.004G255400 KH domain containing protein, putative, expressed -
8 Sobic.001G217850 - -
9 Sobic.006G174050 - K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
10 Sobic.001G525500 TKL_IRAK_CrRLK1L-1.6 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
11 Sobic.005G168900 expressed protein -
12 Sobic.009G158150 - -
13 Sobic.001G516400 - -
14 Sobic.003G096750 - -
15 Sobic.002G178900 SNARE domain containing protein, putative, expressed K08506: syntaxin of plants SYP7
16 Sobic.006G243300 expressed protein -
17 Sobic.006G060400 expressed protein -
18 Sobic.002G000900 lachrymatory factor synthase, putative, expressed -
19 Sobic.001G163500 - -
20 Sobic.007G024400 ribosome, putative, expressed -


Gene co-expression network
sample Sobic005G182300 Sobic005G182300 Sobic003G109000 Sobic003G109000 Sobic005G182300--Sobic003G109000 Sobic010G244400 Sobic010G244400 Sobic005G182300--Sobic010G244400 Sobic003G327300 Sobic003G327300 Sobic005G182300--Sobic003G327300 Sobic003G357900 Sobic003G357900 Sobic005G182300--Sobic003G357900 Sobic001G105400 Sobic001G105400 Sobic005G182300--Sobic001G105400 Sobic009G170050 Sobic009G170050 Sobic005G182300--Sobic009G170050 Sobic004G255400 Sobic004G255400 Sobic005G182300--Sobic004G255400 Sobic001G217850 Sobic001G217850 Sobic005G182300--Sobic001G217850 Sobic006G174050 Sobic006G174050 Sobic005G182300--Sobic006G174050 Sobic005G165300 Sobic005G165300 Sobic003G109000--Sobic005G165300 Sobic001G334800 Sobic001G334800 Sobic003G109000--Sobic001G334800 Sobic003G109000--Sobic003G357900 Sobic010G003800 Sobic010G003800 Sobic003G109000--Sobic010G003800 Sobic005G216833 Sobic005G216833 Sobic003G109000--Sobic005G216833 Sobic002G018800 Sobic002G018800 Sobic003G109000--Sobic002G018800 Sobic009G045400 Sobic009G045400 Sobic003G109000--Sobic009G045400 Sobic007G132300 Sobic007G132300 Sobic003G109000--Sobic007G132300 Sobic003G261766 Sobic003G261766 Sobic003G109000--Sobic003G261766 Sobic010G244400--Sobic004G255400 Sobic003G096750 Sobic003G096750 Sobic010G244400--Sobic003G096750 Sobic006G193801 Sobic006G193801 Sobic010G244400--Sobic006G193801 Sobic008G040201 Sobic008G040201 Sobic010G244400--Sobic008G040201 Sobic001G163500 Sobic001G163500 Sobic010G244400--Sobic001G163500 Sobic004G103450 Sobic004G103450 Sobic010G244400--Sobic004G103450 Sobic004G007133 Sobic004G007133 Sobic010G244400--Sobic004G007133 Sobic001G291701 Sobic001G291701 Sobic010G244400--Sobic001G291701 Sobic003G282400 Sobic003G282400 Sobic010G244400--Sobic003G282400 Sobic002G199300 Sobic002G199300 Sobic003G327300--Sobic002G199300 Sobic003G327300--Sobic003G357900 Sobic002G334700 Sobic002G334700 Sobic003G327300--Sobic002G334700 Sobic003G205000 Sobic003G205000 Sobic003G327300--Sobic003G205000 Sobic009G215100 Sobic009G215100 Sobic003G327300--Sobic009G215100 Sobic006G053550 Sobic006G053550 Sobic003G327300--Sobic006G053550 Sobic002G109700 Sobic002G109700 Sobic003G327300--Sobic002G109700 Sobic002G400700 Sobic002G400700 Sobic003G327300--Sobic002G400700 Sobic002G033550 Sobic002G033550 Sobic003G327300--Sobic002G033550 Sobic001G443400 Sobic001G443400 Sobic003G357900--Sobic001G443400 Sobic003G357900--Sobic005G165300 Sobic009G025750 Sobic009G025750 Sobic003G357900--Sobic009G025750 Sobic005G168900 Sobic005G168900 Sobic003G357900--Sobic005G168900 Sobic003G357900--Sobic006G174050 Sobic003G357900--Sobic001G334800 Sobic006G250350 Sobic006G250350 Sobic003G357900--Sobic006G250350 Sobic003G357900--Sobic002G018800 Sobic010G166201 Sobic010G166201 Sobic003G357900--Sobic010G166201 Sobic001G105400--Sobic003G109000 Sobic001G105400--Sobic005G182300 Sobic004G149150 Sobic004G149150 Sobic001G105400--Sobic004G149150 Sobic001G105400--Sobic010G244400 Sobic008G108100 Sobic008G108100 Sobic001G105400--Sobic008G108100 Sobic008G083700 Sobic008G083700 Sobic001G105400--Sobic008G083700 Sobic001G141333 Sobic001G141333 Sobic001G105400--Sobic001G141333 Sobic003G221650 Sobic003G221650 Sobic001G105400--Sobic003G221650 Sobic004G271350 Sobic004G271350 Sobic001G105400--Sobic004G271350 Sobic009G170050--Sobic005G168900 Sobic009G170050--Sobic006G174050 Sobic002G178900 Sobic002G178900 Sobic009G170050--Sobic002G178900 Sobic009G158150 Sobic009G158150 Sobic009G170050--Sobic009G158150 Sobic003G129700 Sobic003G129700 Sobic009G170050--Sobic003G129700 Sobic006G097600 Sobic006G097600 Sobic009G170050--Sobic006G097600 Sobic007G226900 Sobic007G226900 Sobic009G170050--Sobic007G226900 Sobic001G516400 Sobic001G516400 Sobic009G170050--Sobic001G516400 Sobic002G062400 Sobic002G062400 Sobic009G170050--Sobic002G062400 Sobic004G255400--Sobic003G096750 Sobic004G255400--Sobic001G163500 Sobic002G312550 Sobic002G312550 Sobic004G255400--Sobic002G312550 Sobic004G255400--Sobic004G103450 Sobic004G255400--Sobic010G244400 Sobic004G255400--Sobic001G291701 Sobic004G255400--Sobic003G129700 Sobic004G255400--Sobic008G040201 Sobic004G073232 Sobic004G073232 Sobic004G255400--Sobic004G073232 Sobic001G217850--Sobic005G168900 Sobic001G217850--Sobic009G170050 Sobic010G241400 Sobic010G241400 Sobic001G217850--Sobic010G241400 Sobic004G176550 Sobic004G176550 Sobic001G217850--Sobic004G176550 Sobic001G217850--Sobic003G357900 Sobic006G192900 Sobic006G192900 Sobic001G217850--Sobic006G192900 Sobic001G217850--Sobic006G174050 Sobic001G217850--Sobic002G062400 Sobic006G009200 Sobic006G009200 Sobic001G217850--Sobic006G009200 Sobic006G174050--Sobic009G170050 Sobic006G174050--Sobic003G205000 Sobic006G174050--Sobic009G158150 Sobic010G266400 Sobic010G266400 Sobic006G174050--Sobic010G266400 Sobic006G174050--Sobic010G166201 Sobic006G174050--Sobic005G168900 Sobic006G174050--Sobic001G516400 Sobic006G174050--Sobic002G199300 Sobic006G174050--Sobic002G178900
Octagon: transcription factors


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