Gene annotation
Transcriptome id Sobic.001G153600.1
Synonym AGO10, Sb01g013340, PNH, ZLL
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PINHEAD, putative, expressed
UniProt C5WR44
Pfam PF08699 PF16488 PF16487 PF16486 PF02170 PF02171
Panther DB PTHR22891 PTHR22891:SF39
NCBI CDD -
KEGG Orthology K11593; ELF2C, eukaryotic translation initiation factor 2C
Gene Ontology GO:0005515; protein binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G48410 : Stabilizer of iron transporter SufD / Polynucleotidyl transferase
RAP-DB (Rice) LOC_Os07g28850.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a007235
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G276000 - -
2 Sobic.007G122700 expressed protein -
3 Sobic.004G222150 - -
4 Sobic.002G064800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
5 Sobic.005G212201 - -
6 Sobic.008G046000 expressed protein -
7 Sobic.008G141900 ZOS12-07 - C2H2 zinc finger protein, expressed -
8 Sobic.010G211200 ZOS6-06 - C2H2 zinc finger protein, expressed -
9 Sobic.008G191700 - -
10 Sobic.009G155900 hhH-GPD superfamily base excision DNA repair protein, expressed -
11 Sobic.001G376501 - -
12 Sobic.009G090500 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
13 Sobic.009G163400 growth regulator related protein, putative, expressed -
14 Sobic.005G206100 cytochrome P450, putative, expressed -
15 Sobic.002G429700 AMP deaminase, putative, expressed K01490: AMP deaminase
16 Sobic.009G241900 oleosin, putative, expressed -
17 Sobic.005G101100 OsFBX368 - F-box domain containing protein, expressed -
18 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
19 Sobic.001G257650 - -
20 Sobic.002G127900 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase


Gene co-expression network
sample Sobic001G153600 Sobic001G153600 Sobic004G276000 Sobic004G276000 Sobic001G153600--Sobic004G276000 Sobic007G122700 Sobic007G122700 Sobic001G153600--Sobic007G122700 Sobic004G222150 Sobic004G222150 Sobic001G153600--Sobic004G222150 Sobic002G064800 Sobic002G064800 Sobic001G153600--Sobic002G064800 Sobic005G212201 Sobic005G212201 Sobic001G153600--Sobic005G212201 Sobic008G046000 Sobic008G046000 Sobic001G153600--Sobic008G046000 Sobic008G141900 Sobic008G141900 Sobic001G153600--Sobic008G141900 Sobic010G211200 Sobic010G211200 Sobic001G153600--Sobic010G211200 Sobic008G191700 Sobic008G191700 Sobic001G153600--Sobic008G191700 Sobic004G276000--Sobic002G064800 Sobic004G276000--Sobic005G212201 Sobic001G376501 Sobic001G376501 Sobic004G276000--Sobic001G376501 Sobic004G276000--Sobic008G141900 Sobic009G163400 Sobic009G163400 Sobic004G276000--Sobic009G163400 Sobic004G276000--Sobic008G191700 Sobic005G206100 Sobic005G206100 Sobic004G276000--Sobic005G206100 Sobic004G276000--Sobic004G222150 Sobic004G276000--Sobic010G211200 Sobic003G005500 Sobic003G005500 Sobic007G122700--Sobic003G005500 Sobic007G122700--Sobic009G163400 Sobic007G122700--Sobic008G141900 Sobic003G045450 Sobic003G045450 Sobic007G122700--Sobic003G045450 Sobic001G010500 Sobic001G010500 Sobic007G122700--Sobic001G010500 Sobic007G122700--Sobic004G276000 Sobic007G122700--Sobic001G376501 Sobic008G046200 Sobic008G046200 Sobic007G122700--Sobic008G046200 Sobic006G119900 Sobic006G119900 Sobic007G122700--Sobic006G119900 Sobic004G222150--Sobic010G211200 Sobic004G123200 Sobic004G123200 Sobic004G222150--Sobic004G123200 Sobic009G241900 Sobic009G241900 Sobic004G222150--Sobic009G241900 Sobic004G222150--Sobic008G191700 Sobic003G427000 Sobic003G427000 Sobic004G222150--Sobic003G427000 Sobic004G222150--Sobic005G212201 Sobic009G012500 Sobic009G012500 Sobic004G222150--Sobic009G012500 Sobic004G222150--Sobic008G141900 Sobic001G393101 Sobic001G393101 Sobic004G222150--Sobic001G393101 Sobic002G064800--Sobic005G212201 Sobic002G064800--Sobic001G376501 Sobic002G064800--Sobic008G191700 Sobic002G064800--Sobic005G206100 Sobic002G064800--Sobic004G276000 Sobic002G064800--Sobic008G141900 Sobic002G064800--Sobic009G163400 Sobic002G064800--Sobic010G211200 Sobic003G275400 Sobic003G275400 Sobic002G064800--Sobic003G275400 Sobic005G212201--Sobic002G064800 Sobic005G212201--Sobic008G191700 Sobic005G212201--Sobic001G376501 Sobic005G212201--Sobic005G206100 Sobic005G212201--Sobic010G211200 Sobic005G212201--Sobic008G141900 Sobic005G212201--Sobic004G276000 Sobic005G212201--Sobic009G241900 Sobic005G212201--Sobic004G222150 Sobic008G046000--Sobic008G141900 Sobic008G046000--Sobic005G212201 Sobic008G046000--Sobic002G064800 Sobic008G046000--Sobic004G276000 Sobic008G046000--Sobic001G376501 Sobic008G046000--Sobic010G211200 Sobic008G046000--Sobic003G045450 Sobic008G046000--Sobic008G191700 Sobic008G046000--Sobic009G163400 Sobic008G141900--Sobic009G163400 Sobic008G141900--Sobic001G376501 Sobic008G141900--Sobic002G064800 Sobic008G141900--Sobic005G212201 Sobic009G168200 Sobic009G168200 Sobic008G141900--Sobic009G168200 Sobic008G141900--Sobic004G276000 Sobic008G141900--Sobic001G010500 Sobic008G141900--Sobic003G275400 Sobic001G257650 Sobic001G257650 Sobic008G141900--Sobic001G257650 Sobic010G211200--Sobic004G222150 Sobic010G211200--Sobic009G241900 Sobic010G211200--Sobic008G191700 Sobic010G211200--Sobic003G427000 Sobic010G211200--Sobic005G212201 Sobic010G211200--Sobic002G064800 Sobic010G211200--Sobic005G206100 Sobic003G285900 Sobic003G285900 Sobic010G211200--Sobic003G285900 Sobic010G211200--Sobic001G393101 Sobic008G191700--Sobic009G241900 Sobic008G191700--Sobic002G064800 Sobic008G191700--Sobic010G211200 Sobic008G191700--Sobic003G427000 Sobic008G191700--Sobic005G206100 Sobic008G191700--Sobic005G212201 Sobic008G191700--Sobic004G222150 Sobic008G191700--Sobic004G276000 Sobic008G191700--Sobic003G275400
Octagon: transcription factors


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