Gene annotation
Transcriptome id Sobic.001G180600.1
Synonym AGL80, FEM111, Sb01g015720
Functional annotation OsMADS87 - MADS-box family gene with M-gamma type-box, expressed
UniProt C5WU72
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF188
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G48670 : AGAMOUS-like 80
RAP-DB (Rice) LOC_Os03g38610.1 : OsMADS87 - MADS-box family gene with M-gamma type-box, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G061701 - -
2 Sobic.004G023500 GATA zinc finger domain containing protein, expressed -
3 Sobic.008G039501 - -
4 Sobic.005G217300 expressed protein -
5 Sobic.002G150100 hypothetical protein -
6 Sobic.002G150100 hypothetical protein -
7 Sobic.002G150100 hypothetical protein -
8 Sobic.003G344050 - -
9 Sobic.002G220800 expressed protein -
10 Sobic.007G108200 - -
11 Sobic.003G249050 - -
12 Sobic.007G065900 Cupin domain containing protein, expressed -
13 Sobic.008G157800 BURP domain containing protein, expressed -
14 Sobic.005G032100 hypothetical protein -
15 Sobic.010G113600 vignain precursor, putative, expressed -
16 Sobic.007G065800 Cupin domain containing protein, expressed -
17 Sobic.009G099400 peptidase, T1 family, putative, expressed -
18 Sobic.008G146000 - -
19 Sobic.002G195500 Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed -
20 Sobic.004G231350 - -


Gene co-expression network
sample Sobic001G180600 Sobic001G180600 Sobic004G061701 Sobic004G061701 Sobic001G180600--Sobic004G061701 Sobic004G023500 Sobic004G023500 Sobic001G180600--Sobic004G023500 Sobic008G039501 Sobic008G039501 Sobic001G180600--Sobic008G039501 Sobic005G217300 Sobic005G217300 Sobic001G180600--Sobic005G217300 Sobic002G150100 Sobic002G150100 Sobic001G180600--Sobic002G150100 Sobic003G344050 Sobic003G344050 Sobic001G180600--Sobic003G344050 Sobic002G220800 Sobic002G220800 Sobic001G180600--Sobic002G220800 Sobic004G061701--Sobic003G344050 Sobic004G061701--Sobic002G150100 Sobic007G108200 Sobic007G108200 Sobic004G061701--Sobic007G108200 Sobic004G061701--Sobic002G220800 Sobic004G061701--Sobic008G039501 Sobic003G249050 Sobic003G249050 Sobic004G061701--Sobic003G249050 Sobic008G157800 Sobic008G157800 Sobic004G061701--Sobic008G157800 Sobic004G023500--Sobic004G061701 Sobic004G023500--Sobic008G157800 Sobic009G099400 Sobic009G099400 Sobic004G023500--Sobic009G099400 Sobic007G065900 Sobic007G065900 Sobic004G023500--Sobic007G065900 Sobic004G023500--Sobic003G344050 Sobic004G023500--Sobic002G150100 Sobic004G023500--Sobic002G220800 Sobic008G039501--Sobic002G150100 Sobic008G039501--Sobic003G344050 Sobic008G039501--Sobic004G061701 Sobic008G039501--Sobic002G220800 Sobic008G039501--Sobic007G108200 Sobic008G039501--Sobic003G249050 Sobic008G039501--Sobic004G023500 Sobic005G217300--Sobic004G023500 Sobic005G217300--Sobic007G065900 Sobic007G065800 Sobic007G065800 Sobic005G217300--Sobic007G065800 Sobic004G292001 Sobic004G292001 Sobic005G217300--Sobic004G292001 Sobic005G217300--Sobic008G157800 Sobic005G217300--Sobic004G061701 Sobic002G195500 Sobic002G195500 Sobic005G217300--Sobic002G195500 Sobic010G113600 Sobic010G113600 Sobic005G217300--Sobic010G113600 Sobic002G130601 Sobic002G130601 Sobic005G217300--Sobic002G130601 Sobic002G150100--Sobic002G150100 Sobic002G150100--Sobic003G344050 Sobic002G150100--Sobic002G220800 Sobic002G150100--Sobic007G108200 Sobic002G150100--Sobic003G249050 Sobic002G150100--Sobic004G061701 Sobic002G150100--Sobic008G039501 Sobic002G150100--Sobic004G023500 Sobic003G344050--Sobic002G150100 Sobic003G344050--Sobic002G220800 Sobic003G344050--Sobic007G108200 Sobic003G344050--Sobic003G249050 Sobic003G344050--Sobic004G061701 Sobic003G344050--Sobic008G039501 Sobic003G344050--Sobic004G023500 Sobic002G220800--Sobic002G150100 Sobic002G220800--Sobic003G344050 Sobic002G220800--Sobic007G108200 Sobic002G220800--Sobic003G249050 Sobic002G220800--Sobic004G061701 Sobic002G220800--Sobic008G039501 Sobic002G220800--Sobic004G023500
Octagon: transcription factors


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