Gene annotation
Transcriptome id Sobic.001G187000.2
Synonym Sb01g016420
Functional annotation 4-coumarate--CoA ligase-like 7, putative, expressed
UniProt A0A1Z5S6P3
Pfam PF13193 PF00501
Panther DB PTHR24096 PTHR24096:SF213
NCBI CDD KOG1176; Acyl-CoA synthetase
KEGG Orthology K01904; 4-coumarate--CoA ligase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G05160 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os03g05780.1 : 4-coumarate--CoA ligase-like 7, putative, expressed
MaizeGDB (Corn) Zm00025a007071 , Zm00025a000699
Brachypodium KQK23604
Barley HORVU4Hr1G072150.1 , HORVU4Hr1G072150.4 , HORVU4Hr1G072150.3 , HORVU4Hr1G072150.2 , HORVU4Hr1G072130.3 , HORVU4Hr1G072130.2 , HORVU4Hr1G072130.1
Wheat TraesCS4A02G036200 , TraesCS4B02G269200 , TraesCS4B02G269200 , TraesCS4D02G268400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G262200 DNA binding protein, putative, expressed -
2 Sobic.003G215200 expressed protein -
3 Sobic.008G004100 phosphatidate cytidylyltransferase, putative, expressed K15892: farnesol kinase
4 Sobic.009G213700 - -
5 Sobic.003G417100 esterase, putative, expressed -
6 Sobic.001G090000 expressed protein -
7 Sobic.009G033600 "OsSAMS1(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659917)@S-adenosylmethionine synthetase, putative, expressed K00789: S-adenosylmethionine synthetase
8 Sobic.009G102300 hydrolase, acting on glycosyl bonds, putative, expressed K01227: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
9 Sobic.007G090460 - K08235: xyloglucan:xyloglucosyl transferase
10 Sobic.005G211400 cytochrome P450, putative, expressed -
11 Sobic.006G230300 similar to LOC Os04g54190: cysteine-rich receptor-like protein kinase 8 precursor(PubMedID : 24655390)@similar to LOC.Os04g54190:cysteine-rich receptor-like protein kinase 8 precursor(PubMedID : 24655390)@cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
12 Sobic.003G343900 expressed protein -
13 Sobic.009G213600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@green ripe-like, putative, expressed -
14 Sobic.001G258600 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.009G130100 CHIT17 - Chitinase family protein precursor, expressed K01183: chitinase
16 Sobic.003G371750 - -
17 Sobic.006G235200 expressed protein -
18 Sobic.006G072000 OsWAK26 - OsWAK receptor-like protein kinase, expressed -
19 Sobic.010G061900 plant protein of unknown function domain containing protein, expressed -
20 Sobic.004G172700 plant neutral invertase domain containing protein, expressed -


Gene co-expression network
sample Sobic001G187000 Sobic001G187000 Sobic004G262200 Sobic004G262200 Sobic001G187000--Sobic004G262200 Sobic003G215200 Sobic003G215200 Sobic001G187000--Sobic003G215200 Sobic008G004100 Sobic008G004100 Sobic001G187000--Sobic008G004100 Sobic009G213700 Sobic009G213700 Sobic001G187000--Sobic009G213700 Sobic003G417100 Sobic003G417100 Sobic001G187000--Sobic003G417100 Sobic001G090000 Sobic001G090000 Sobic001G187000--Sobic001G090000 Sobic009G033600 Sobic009G033600 Sobic001G187000--Sobic009G033600 Sobic009G102300 Sobic009G102300 Sobic001G187000--Sobic009G102300 Sobic007G090460 Sobic007G090460 Sobic001G187000--Sobic007G090460 Sobic003G371750 Sobic003G371750 Sobic004G262200--Sobic003G371750 Sobic006G059700 Sobic006G059700 Sobic004G262200--Sobic006G059700 Sobic001G328800 Sobic001G328800 Sobic004G262200--Sobic001G328800 Sobic003G280400 Sobic003G280400 Sobic004G262200--Sobic003G280400 Sobic006G197100 Sobic006G197100 Sobic004G262200--Sobic006G197100 Sobic004G042000 Sobic004G042000 Sobic004G262200--Sobic004G042000 Sobic006G260200 Sobic006G260200 Sobic004G262200--Sobic006G260200 Sobic009G221500 Sobic009G221500 Sobic004G262200--Sobic009G221500 Sobic003G404600 Sobic003G404600 Sobic004G262200--Sobic003G404600 Sobic003G215200--Sobic003G417100 Sobic006G230300 Sobic006G230300 Sobic003G215200--Sobic006G230300 Sobic003G215200--Sobic004G262200 Sobic003G157600 Sobic003G157600 Sobic003G215200--Sobic003G157600 Sobic010G194100 Sobic010G194100 Sobic003G215200--Sobic010G194100 Sobic006G157900 Sobic006G157900 Sobic003G215200--Sobic006G157900 Sobic002G183700 Sobic002G183700 Sobic003G215200--Sobic002G183700 Sobic002G042200 Sobic002G042200 Sobic003G215200--Sobic002G042200 Sobic003G228600 Sobic003G228600 Sobic003G215200--Sobic003G228600 Sobic002G392800 Sobic002G392800 Sobic008G004100--Sobic002G392800 Sobic001G242800 Sobic001G242800 Sobic008G004100--Sobic001G242800 Sobic009G213600 Sobic009G213600 Sobic008G004100--Sobic009G213600 Sobic008G004100--Sobic006G230300 Sobic008G004100--Sobic009G102300 Sobic004G161900 Sobic004G161900 Sobic008G004100--Sobic004G161900 Sobic010G218300 Sobic010G218300 Sobic008G004100--Sobic010G218300 Sobic002G280700 Sobic002G280700 Sobic008G004100--Sobic002G280700 Sobic001G476300 Sobic001G476300 Sobic008G004100--Sobic001G476300 Sobic009G213700--Sobic009G213600 Sobic003G414600 Sobic003G414600 Sobic009G213700--Sobic003G414600 Sobic001G230900 Sobic001G230900 Sobic009G213700--Sobic001G230900 Sobic009G213700--Sobic001G090000 Sobic009G213700--Sobic001G187000 Sobic001G516500 Sobic001G516500 Sobic009G213700--Sobic001G516500 Sobic009G157900 Sobic009G157900 Sobic009G213700--Sobic009G157900 Sobic002G258100 Sobic002G258100 Sobic009G213700--Sobic002G258100 Sobic003G343900 Sobic003G343900 Sobic009G213700--Sobic003G343900 Sobic003G417100--Sobic002G042200 Sobic003G417100--Sobic003G215200 Sobic003G417100--Sobic010G194100 Sobic006G274933 Sobic006G274933 Sobic003G417100--Sobic006G274933 Sobic003G417100--Sobic006G197100 Sobic003G140700 Sobic003G140700 Sobic003G417100--Sobic003G140700 Sobic007G050200 Sobic007G050200 Sobic003G417100--Sobic007G050200 Sobic003G417100--Sobic003G228600 Sobic002G216100 Sobic002G216100 Sobic003G417100--Sobic002G216100 Sobic010G144400 Sobic010G144400 Sobic001G090000--Sobic010G144400 Sobic009G016201 Sobic009G016201 Sobic001G090000--Sobic009G016201 Sobic008G132800 Sobic008G132800 Sobic001G090000--Sobic008G132800 Sobic002G068300 Sobic002G068300 Sobic001G090000--Sobic002G068300 Sobic004G172700 Sobic004G172700 Sobic001G090000--Sobic004G172700 Sobic010G029400 Sobic010G029400 Sobic001G090000--Sobic010G029400 Sobic006G150600 Sobic006G150600 Sobic001G090000--Sobic006G150600 Sobic001G282100 Sobic001G282100 Sobic001G090000--Sobic001G282100 Sobic010G008100 Sobic010G008100 Sobic001G090000--Sobic010G008100 Sobic008G132700 Sobic008G132700 Sobic009G033600--Sobic008G132700 Sobic009G033600--Sobic001G282100 Sobic009G033600--Sobic003G371750 Sobic009G033600--Sobic003G215200 Sobic003G305700 Sobic003G305700 Sobic009G033600--Sobic003G305700 Sobic001G494000 Sobic001G494000 Sobic009G033600--Sobic001G494000 Sobic004G066600 Sobic004G066600 Sobic009G033600--Sobic004G066600 Sobic007G008200 Sobic007G008200 Sobic009G033600--Sobic007G008200 Sobic004G051700 Sobic004G051700 Sobic009G033600--Sobic004G051700 Sobic010G045400 Sobic010G045400 Sobic009G102300--Sobic010G045400 Sobic009G102300--Sobic006G230300 Sobic002G114800 Sobic002G114800 Sobic009G102300--Sobic002G114800 Sobic009G102300--Sobic008G004100 Sobic009G246100 Sobic009G246100 Sobic009G102300--Sobic009G246100 Sobic009G102300--Sobic003G215200 Sobic006G130501 Sobic006G130501 Sobic009G102300--Sobic006G130501 Sobic009G102300--Sobic004G161900 Sobic009G102300--Sobic010G218300 Sobic010G088800 Sobic010G088800 Sobic007G090460--Sobic010G088800 Sobic006G103300 Sobic006G103300 Sobic007G090460--Sobic006G103300 Sobic005G110406 Sobic005G110406 Sobic007G090460--Sobic005G110406 Sobic007G090460--Sobic002G183700 Sobic006G225500 Sobic006G225500 Sobic007G090460--Sobic006G225500 Sobic002G085900 Sobic002G085900 Sobic007G090460--Sobic002G085900 Sobic006G172500 Sobic006G172500 Sobic007G090460--Sobic006G172500 Sobic004G110700 Sobic004G110700 Sobic007G090460--Sobic004G110700 Sobic004G029100 Sobic004G029100 Sobic007G090460--Sobic004G029100
Octagon: transcription factors


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