Gene annotation
Transcriptome id Sobic.001G294800.1
Synonym Sb01g028795, MED31
Functional annotation mediator of RNA polymerase II transcription subunit 31, putative, expressed
UniProt A0A1B6QLU5
Pfam PF05669
Panther DB PTHR13186 PTHR13186:SF0
NCBI CDD -
KEGG Orthology K15153; MED31, mediator of RNA polymerase II transcription subunit 31
Gene Ontology GO:0016592; mediator complex GO:0006355regulation of transcription, DNA-templated GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT5G19910 : SOH1 family protein
RAP-DB (Rice) LOC_Os07g07020.1 : mediator of RNA polymerase II transcription subunit 31, putative, expressed
MaizeGDB (Corn) Zm00025a005568
Brachypodium PNT67912
Barley HORVU1Hr1G055490.8 , HORVU1Hr1G055490.9 , HORVU1Hr1G055490.6 , HORVU1Hr1G055490.7 , HORVU1Hr1G055490.5 , HORVU1Hr1G055490.2 , HORVU1Hr1G055490.3 , HORVU1Hr1G055490.10
Wheat TraesCS1A02G216800 , TraesCS1D02G218600 , TraesCS1B02G229800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G154450 - -
2 Sobic.010G052100 S-locus-like receptor protein kinase, putative, expressed -
3 Sobic.006G037800 - -
4 Sobic.010G149000 - -
5 Sobic.006G252800 - -
6 Sobic.001G045900 polygalacturonase, putative, expressed -
7 Sobic.010G225175 - -
8 Sobic.007G127200 ECT protein, putative, expressed K07877: Ras-related protein Rab-2A
9 Sobic.002G149500 ELF protein, expressed -
10 Sobic.004G260250 - -
11 Sobic.004G127733 - -
12 Sobic.007G134700 formin, putative, expressed -
13 Sobic.005G154600 - -
14 Sobic.005G176300 Leucine Rich Repeat family protein, expressed -
15 Sobic.010G247750 - -
16 Sobic.007G103200 - -
17 Sobic.004G207733 - -
18 Sobic.009G094100 - -
19 Sobic.003G251000 S-locus-like receptor protein kinase, putative, expressed -
20 Sobic.006G035350 - K02986: RP-S4, small subunit ribosomal protein S4


Gene co-expression network
sample Sobic001G294800 Sobic001G294800 Sobic002G154450 Sobic002G154450 Sobic001G294800--Sobic002G154450 Sobic010G052100 Sobic010G052100 Sobic001G294800--Sobic010G052100 Sobic006G037800 Sobic006G037800 Sobic001G294800--Sobic006G037800 Sobic010G149000 Sobic010G149000 Sobic001G294800--Sobic010G149000 Sobic006G252800 Sobic006G252800 Sobic001G294800--Sobic006G252800 Sobic001G045900 Sobic001G045900 Sobic001G294800--Sobic001G045900 Sobic010G225175 Sobic010G225175 Sobic001G294800--Sobic010G225175 Sobic007G127200 Sobic007G127200 Sobic001G294800--Sobic007G127200 Sobic002G149500 Sobic002G149500 Sobic001G294800--Sobic002G149500 Sobic002G154450--Sobic010G052100 Sobic004G127733 Sobic004G127733 Sobic002G154450--Sobic004G127733 Sobic002G154450--Sobic007G127200 Sobic006G176900 Sobic006G176900 Sobic002G154450--Sobic006G176900 Sobic002G154450--Sobic001G045900 Sobic003G251000 Sobic003G251000 Sobic002G154450--Sobic003G251000 Sobic006G149900 Sobic006G149900 Sobic002G154450--Sobic006G149900 Sobic002G154450--Sobic010G149000 Sobic005G154600 Sobic005G154600 Sobic002G154450--Sobic005G154600 Sobic010G052100--Sobic010G225175 Sobic010G052100--Sobic001G045900 Sobic010G052100--Sobic002G154450 Sobic010G052100--Sobic007G127200 Sobic004G127350 Sobic004G127350 Sobic010G052100--Sobic004G127350 Sobic009G094100 Sobic009G094100 Sobic010G052100--Sobic009G094100 Sobic007G103200 Sobic007G103200 Sobic010G052100--Sobic007G103200 Sobic010G247750 Sobic010G247750 Sobic010G052100--Sobic010G247750 Sobic010G052100--Sobic004G127733 Sobic006G037800--Sobic010G149000 Sobic007G134700 Sobic007G134700 Sobic006G037800--Sobic007G134700 Sobic006G037800--Sobic010G052100 Sobic006G037800--Sobic002G154450 Sobic006G037800--Sobic003G251000 Sobic006G239200 Sobic006G239200 Sobic006G037800--Sobic006G239200 Sobic001G202800 Sobic001G202800 Sobic006G037800--Sobic001G202800 Sobic005G176300 Sobic005G176300 Sobic006G037800--Sobic005G176300 Sobic009G011050 Sobic009G011050 Sobic006G037800--Sobic009G011050 Sobic010G149000--Sobic006G037800 Sobic010G149000--Sobic007G134700 Sobic010G149000--Sobic002G154450 Sobic010G149000--Sobic010G052100 Sobic003G024450 Sobic003G024450 Sobic010G149000--Sobic003G024450 Sobic008G056000 Sobic008G056000 Sobic010G149000--Sobic008G056000 Sobic010G149000--Sobic010G225175 Sobic010G149000--Sobic001G202800 Sobic004G143550 Sobic004G143550 Sobic010G149000--Sobic004G143550 Sobic006G252800--Sobic010G247750 Sobic006G252800--Sobic007G127200 Sobic003G260500 Sobic003G260500 Sobic006G252800--Sobic003G260500 Sobic006G035350 Sobic006G035350 Sobic006G252800--Sobic006G035350 Sobic009G079600 Sobic009G079600 Sobic006G252800--Sobic009G079600 Sobic004G134400 Sobic004G134400 Sobic006G252800--Sobic004G134400 Sobic006G252800--Sobic007G103200 Sobic007G132650 Sobic007G132650 Sobic006G252800--Sobic007G132650 Sobic004G274300 Sobic004G274300 Sobic006G252800--Sobic004G274300 Sobic001G045900--Sobic004G127733 Sobic001G045900--Sobic010G052100 Sobic001G045900--Sobic007G127200 Sobic001G045900--Sobic010G225175 Sobic004G207733 Sobic004G207733 Sobic001G045900--Sobic004G207733 Sobic001G045900--Sobic006G176900 Sobic001G045100 Sobic001G045100 Sobic001G045900--Sobic001G045100 Sobic001G045900--Sobic007G103200 Sobic001G045900--Sobic002G154450 Sobic010G225175--Sobic010G052100 Sobic010G225175--Sobic001G045900 Sobic010G225175--Sobic007G127200 Sobic010G225175--Sobic004G127350 Sobic010G225175--Sobic002G154450 Sobic010G225175--Sobic010G149000 Sobic010G225175--Sobic006G037800 Sobic010G225175--Sobic010G247750 Sobic010G225175--Sobic001G045100 Sobic007G127200--Sobic010G247750 Sobic007G127200--Sobic004G127733 Sobic007G127200--Sobic004G134400 Sobic007G127200--Sobic010G052100 Sobic007G127200--Sobic001G045900 Sobic007G127200--Sobic009G079600 Sobic007G127200--Sobic006G035350 Sobic008G093300 Sobic008G093300 Sobic007G127200--Sobic008G093300 Sobic007G127200--Sobic003G260500 Sobic006G038050 Sobic006G038050 Sobic002G149500--Sobic006G038050 Sobic002G149500--Sobic010G149000 Sobic003G383000 Sobic003G383000 Sobic002G149500--Sobic003G383000 Sobic001G440401 Sobic001G440401 Sobic002G149500--Sobic001G440401 Sobic002G168750 Sobic002G168750 Sobic002G149500--Sobic002G168750 Sobic002G149500--Sobic006G037800 Sobic007G083700 Sobic007G083700 Sobic002G149500--Sobic007G083700 Sobic003G288700 Sobic003G288700 Sobic002G149500--Sobic003G288700 Sobic002G149500--Sobic007G134700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.