Gene annotation
Transcriptome id Sobic.001G516000.1
Synonym ATHCHIB, PR3, B-CHI, HCHIB, PR-3, Sb01g048140, CHI-B
Functional annotation CHIT16 - Chitinase family protein precursor, expressed
UniProt C5WZU7
Pfam PF00182
Panther DB PTHR22595 PTHR22595:SF45
NCBI CDD KOG4742; Predicted chitinase
KEGG Orthology -
Gene Ontology GO:0016998; cell wall macromolecule catabolic process GO:0006032chitin catabolic process GO:0004568chitinase activity


Orthologs (automatic annotation)
TAIR AT3G12500 : basic chitinase
RAP-DB (Rice) LOC_Os03g04060.1 : CHIT16 - Chitinase family protein precursor, expressed
MaizeGDB (Corn) Zm00025a041699 , Zm00025a003215 , Zm00025a000465 , Zm00025a000464 , Zm00025a018536
Brachypodium KQJ97632 , KQK23799
Barley -
Wheat TraesCS5A02G500100 , TraesCS4D02G325500 , TraesCS4D02G325400 , TraesCS4B02G328400 , TraesCS5A02G500200 , TraesCS7B02G493700
Populus -


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cDNA sequences
Sobic.001G516000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G324600 cysteine proteinase inhibitor 8 precursor, putative, expressed -
2 Sobic.008G031000 LTPL26 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.002G053201 - -
4 Sobic.002G094900 DEFL72 - Defensin and Defensin-like DEFL family -
5 Sobic.003G245500 OsFBDUF5 - F-box and DUF domain containing protein, expressed -
6 Sobic.009G078600 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.008G073800 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
8 Sobic.008G071550 - -
9 Sobic.007G024100 - -
10 Sobic.005G213900 gamma-thionin family domain containing protein, expressed -
11 Sobic.008G182200 - -
12 Sobic.003G207800 OsFBD2 - F-box and FBD domain containing protein, expressed -
13 Sobic.005G141400 - -
14 Sobic.002G162200 DEFL34 - Defensin and Defensin-like DEFL family, expressed -
15 Sobic.008G071200 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
16 Sobic.005G152700 DEF3 - Defensin and Defensin-like DEFL family, expressed -
17 Sobic.004G015100 - -
18 Sobic.005G153300 - -
19 Sobic.003G411100 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
20 Sobic.010G008200 LTPL31 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic001G516000 Sobic001G516000 Sobic001G324600 Sobic001G324600 Sobic001G516000--Sobic001G324600 Sobic008G031000 Sobic008G031000 Sobic001G516000--Sobic008G031000 Sobic002G053201 Sobic002G053201 Sobic001G516000--Sobic002G053201 Sobic002G094900 Sobic002G094900 Sobic001G516000--Sobic002G094900 Sobic003G245500 Sobic003G245500 Sobic001G516000--Sobic003G245500 Sobic009G078600 Sobic009G078600 Sobic001G516000--Sobic009G078600 Sobic008G073800 Sobic008G073800 Sobic001G516000--Sobic008G073800 Sobic008G071550 Sobic008G071550 Sobic001G516000--Sobic008G071550 Sobic007G024100 Sobic007G024100 Sobic001G516000--Sobic007G024100 Sobic006G144101 Sobic006G144101 Sobic001G324600--Sobic006G144101 Sobic003G411100 Sobic003G411100 Sobic001G324600--Sobic003G411100 Sobic002G345500 Sobic002G345500 Sobic001G324600--Sobic002G345500 Sobic008G071200 Sobic008G071200 Sobic001G324600--Sobic008G071200 Sobic002G162200 Sobic002G162200 Sobic001G324600--Sobic002G162200 Sobic005G153300 Sobic005G153300 Sobic001G324600--Sobic005G153300 Sobic008G182200 Sobic008G182200 Sobic001G324600--Sobic008G182200 Sobic008G048600 Sobic008G048600 Sobic001G324600--Sobic008G048600 Sobic004G015100 Sobic004G015100 Sobic001G324600--Sobic004G015100 Sobic008G031000--Sobic003G245500 Sobic008G031000--Sobic002G053201 Sobic008G031000--Sobic002G094900 Sobic008G031000--Sobic001G324600 Sobic008G031000--Sobic009G078600 Sobic008G031000--Sobic007G024100 Sobic008G031000--Sobic008G182200 Sobic008G031000--Sobic002G162200 Sobic008G031000--Sobic008G071200 Sobic002G053201--Sobic002G094900 Sobic002G053201--Sobic003G245500 Sobic002G053201--Sobic008G073800 Sobic002G053201--Sobic007G024100 Sobic002G053201--Sobic009G078600 Sobic002G053201--Sobic008G182200 Sobic003G207800 Sobic003G207800 Sobic002G053201--Sobic003G207800 Sobic002G053201--Sobic002G162200 Sobic002G053201--Sobic008G071200 Sobic002G094900--Sobic002G053201 Sobic002G094900--Sobic003G207800 Sobic002G094900--Sobic003G245500 Sobic002G094900--Sobic008G073800 Sobic002G094900--Sobic009G078600 Sobic005G213900 Sobic005G213900 Sobic002G094900--Sobic005G213900 Sobic002G094900--Sobic007G024100 Sobic002G094900--Sobic008G071550 Sobic002G094900--Sobic008G182200 Sobic003G245500--Sobic008G182200 Sobic003G245500--Sobic009G078600 Sobic003G245500--Sobic002G053201 Sobic003G245500--Sobic002G162200 Sobic003G245500--Sobic008G071200 Sobic003G245500--Sobic007G024100 Sobic003G245500--Sobic004G015100 Sobic003G245500--Sobic002G094900 Sobic003G245500--Sobic008G073800 Sobic009G078600--Sobic003G245500 Sobic009G078600--Sobic008G071550 Sobic009G078600--Sobic002G053201 Sobic009G078600--Sobic002G094900 Sobic009G078600--Sobic007G024100 Sobic005G141400 Sobic005G141400 Sobic009G078600--Sobic005G141400 Sobic009G078600--Sobic008G182200 Sobic009G078600--Sobic005G213900 Sobic009G078600--Sobic008G073800 Sobic008G073800--Sobic002G053201 Sobic008G073800--Sobic002G094900 Sobic008G073800--Sobic008G182200 Sobic008G073800--Sobic003G245500 Sobic008G073800--Sobic002G162200 Sobic008G073800--Sobic008G071200 Sobic008G073800--Sobic004G015100 Sobic008G073800--Sobic005G153300 Sobic008G073800--Sobic007G024100 Sobic008G071550--Sobic005G141400 Sobic008G071550--Sobic009G078600 Sobic010G008200 Sobic010G008200 Sobic008G071550--Sobic010G008200 Sobic010G011300 Sobic010G011300 Sobic008G071550--Sobic010G011300 Sobic008G071550--Sobic005G213900 Sobic008G071550--Sobic003G245500 Sobic008G071550--Sobic002G094900 Sobic008G071550--Sobic002G053201 Sobic008G071550--Sobic007G024100 Sobic007G024100--Sobic003G245500 Sobic005G152700 Sobic005G152700 Sobic007G024100--Sobic005G152700 Sobic007G024100--Sobic002G053201 Sobic007G024100--Sobic002G094900 Sobic007G024100--Sobic009G078600 Sobic007G024100--Sobic008G182200 Sobic007G024100--Sobic002G162200 Sobic007G024100--Sobic008G071200 Sobic007G024100--Sobic008G073800
Octagon: transcription factors


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