Gene annotation
Transcriptome id Sobic.002G189800.2
Synonym Sb02g023730
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1W0W4V4
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF74
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G10910 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g43120.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020950 , Zm00025a046836
Brachypodium KQK00534 , KQJ91398 , KQK00813
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G070300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
2 Sobic.003G243400 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
3 Sobic.001G162900 zinc finger protein-related, putative, expressed K11968: ariadne-1
4 Sobic.010G212600 WAX2, putative, expressed -
5 Sobic.009G067200 expressed protein -
6 Sobic.002G008000 DnaK family protein, putative, expressed -
7 Sobic.002G223100 annexin, putative, expressed -
8 Sobic.009G053001 - -
9 Sobic.004G303150 - -
10 Sobic.002G044900 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.008G164375 - -
12 Sobic.002G401301 - -
13 Sobic.004G290400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.009G239000 OsMADS78 - MADS-box family gene with M-alpha type-box, expressed -
15 Sobic.004G274000 STE_MEK_ste7_MAP2K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
16 Sobic.008G116900 OsFBL38 - F-box domain and LRR containing protein, expressed -
17 Sobic.010G172666 - -
18 Sobic.001G493600 vesicle-associated membrane protein, putative, expressed -
19 Sobic.004G286351 - -
20 Sobic.002G349800 ubiquitin-like protein SMT3, putative, expressed K12160: SUMO, small ubiquitin-related modifier


Gene co-expression network
sample Sobic002G189800 Sobic002G189800 Sobic003G070300 Sobic003G070300 Sobic002G189800--Sobic003G070300 Sobic003G243400 Sobic003G243400 Sobic002G189800--Sobic003G243400 Sobic001G162900 Sobic001G162900 Sobic002G189800--Sobic001G162900 Sobic010G212600 Sobic010G212600 Sobic002G189800--Sobic010G212600 Sobic009G067200 Sobic009G067200 Sobic002G189800--Sobic009G067200 Sobic002G008000 Sobic002G008000 Sobic002G189800--Sobic002G008000 Sobic002G223100 Sobic002G223100 Sobic002G189800--Sobic002G223100 Sobic009G053001 Sobic009G053001 Sobic002G189800--Sobic009G053001 Sobic004G303150 Sobic004G303150 Sobic002G189800--Sobic004G303150 Sobic003G070300--Sobic002G189800 Sobic003G070300--Sobic001G162900 Sobic003G070300--Sobic003G243400 Sobic006G229200 Sobic006G229200 Sobic003G070300--Sobic006G229200 Sobic003G193300 Sobic003G193300 Sobic003G070300--Sobic003G193300 Sobic003G070300--Sobic010G212600 Sobic003G070300--Sobic009G067200 Sobic008G005400 Sobic008G005400 Sobic003G070300--Sobic008G005400 Sobic006G188100 Sobic006G188100 Sobic003G070300--Sobic006G188100 Sobic003G243400--Sobic010G212600 Sobic002G044900 Sobic002G044900 Sobic003G243400--Sobic002G044900 Sobic003G243400--Sobic009G067200 Sobic002G267050 Sobic002G267050 Sobic003G243400--Sobic002G267050 Sobic002G401301 Sobic002G401301 Sobic003G243400--Sobic002G401301 Sobic003G243400--Sobic002G223100 Sobic001G152500 Sobic001G152500 Sobic003G243400--Sobic001G152500 Sobic003G243400--Sobic002G008000 Sobic005G135500 Sobic005G135500 Sobic003G243400--Sobic005G135500 Sobic001G162900--Sobic002G189800 Sobic001G162900--Sobic003G070300 Sobic001G162900--Sobic003G243400 Sobic001G162900--Sobic002G223100 Sobic001G162900--Sobic002G008000 Sobic001G162900--Sobic009G053001 Sobic001G162900--Sobic010G212600 Sobic009G239000 Sobic009G239000 Sobic001G162900--Sobic009G239000 Sobic001G162900--Sobic004G303150 Sobic010G212600--Sobic003G243400 Sobic010G212600--Sobic002G267050 Sobic010G212600--Sobic009G067200 Sobic010G212600--Sobic001G152500 Sobic010G212600--Sobic002G044900 Sobic010G212600--Sobic005G135500 Sobic010G272400 Sobic010G272400 Sobic010G212600--Sobic010G272400 Sobic008G053000 Sobic008G053000 Sobic010G212600--Sobic008G053000 Sobic010G212600--Sobic002G401301 Sobic009G067200--Sobic010G212600 Sobic009G067200--Sobic003G243400 Sobic004G290400 Sobic004G290400 Sobic009G067200--Sobic004G290400 Sobic009G067200--Sobic002G267050 Sobic001G022000 Sobic001G022000 Sobic009G067200--Sobic001G022000 Sobic009G067200--Sobic002G044900 Sobic009G067200--Sobic001G152500 Sobic009G067200--Sobic010G272400 Sobic002G384800 Sobic002G384800 Sobic009G067200--Sobic002G384800 Sobic004G274000 Sobic004G274000 Sobic002G008000--Sobic004G274000 Sobic002G008000--Sobic002G401301 Sobic002G008000--Sobic002G223100 Sobic002G159400 Sobic002G159400 Sobic002G008000--Sobic002G159400 Sobic007G035100 Sobic007G035100 Sobic002G008000--Sobic007G035100 Sobic010G111700 Sobic010G111700 Sobic002G008000--Sobic010G111700 Sobic006G042800 Sobic006G042800 Sobic002G008000--Sobic006G042800 Sobic009G021100 Sobic009G021100 Sobic002G008000--Sobic009G021100 Sobic004G286351 Sobic004G286351 Sobic002G008000--Sobic004G286351 Sobic002G223100--Sobic004G274000 Sobic002G223100--Sobic002G401301 Sobic002G223100--Sobic010G111700 Sobic002G223100--Sobic007G035100 Sobic002G223100--Sobic002G008000 Sobic002G223100--Sobic004G286351 Sobic007G069450 Sobic007G069450 Sobic002G223100--Sobic007G069450 Sobic002G223100--Sobic009G053001 Sobic001G493600 Sobic001G493600 Sobic002G223100--Sobic001G493600 Sobic009G053001--Sobic004G303150 Sobic010G172666 Sobic010G172666 Sobic009G053001--Sobic010G172666 Sobic009G053001--Sobic001G493600 Sobic009G053001--Sobic004G286351 Sobic009G053001--Sobic009G239000 Sobic008G116900 Sobic008G116900 Sobic009G053001--Sobic008G116900 Sobic009G053001--Sobic007G069450 Sobic009G053001--Sobic010G111700 Sobic009G053001--Sobic007G035100 Sobic004G303150--Sobic010G172666 Sobic004G303150--Sobic001G493600 Sobic004G303150--Sobic009G239000 Sobic004G303150--Sobic004G286351 Sobic004G303150--Sobic009G053001 Sobic004G303150--Sobic008G116900 Sobic001G263801 Sobic001G263801 Sobic004G303150--Sobic001G263801 Sobic002G005500 Sobic002G005500 Sobic004G303150--Sobic002G005500 Sobic002G069232 Sobic002G069232 Sobic004G303150--Sobic002G069232
Octagon: transcription factors


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