Gene annotation
Transcriptome id Sobic.003G070300.2,Sobic.003G070300.1
Synonym Sb03g005950
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PPR repeat domain containing protein, putative, expressed
UniProt C5XPZ1
Pfam PF13812 PF01535 PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF399
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15200 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g05860.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a023439 , Zm00025a035649
Brachypodium KQK02747 , PNT69945
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G189800 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.001G162900 zinc finger protein-related, putative, expressed K11968: ariadne-1
3 Sobic.003G243400 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
4 Sobic.006G229200 receptor-like kinase, putative, expressed -
5 Sobic.003G193300 - -
6 Sobic.010G212600 WAX2, putative, expressed -
7 Sobic.009G067200 expressed protein -
8 Sobic.008G005400 cysteine-rich receptor-like protein kinase 4 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
9 Sobic.006G188100 nitrilase-associated protein, putative, expressed K18635: protein SPIRAL1 and related proteins
10 Sobic.003G414100 tropinone reductase, putative, expressed K08081: tropinone reductase I
11 Sobic.006G067300 OsFBX103 - F-box domain containing protein, expressed -
12 Sobic.001G264500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
13 Sobic.003G164300 cullin, putative, expressed K03347: CUL1, cullin 1
14 Sobic.002G223100 annexin, putative, expressed -
15 Sobic.006G172400 expressed protein -
16 Sobic.004G240250 - -
17 Sobic.010G272400 expressed protein -
18 Sobic.001G135900 transferase family protein, putative, expressed -
19 Sobic.009G053001 - -
20 Sobic.005G125400 C4-dicarboxylate transporter/malic acid transport protein, expressed -


Gene co-expression network
sample Sobic003G070300 Sobic003G070300 Sobic002G189800 Sobic002G189800 Sobic003G070300--Sobic002G189800 Sobic001G162900 Sobic001G162900 Sobic003G070300--Sobic001G162900 Sobic003G243400 Sobic003G243400 Sobic003G070300--Sobic003G243400 Sobic006G229200 Sobic006G229200 Sobic003G070300--Sobic006G229200 Sobic003G193300 Sobic003G193300 Sobic003G070300--Sobic003G193300 Sobic010G212600 Sobic010G212600 Sobic003G070300--Sobic010G212600 Sobic009G067200 Sobic009G067200 Sobic003G070300--Sobic009G067200 Sobic008G005400 Sobic008G005400 Sobic003G070300--Sobic008G005400 Sobic006G188100 Sobic006G188100 Sobic003G070300--Sobic006G188100 Sobic002G189800--Sobic003G070300 Sobic002G189800--Sobic003G243400 Sobic002G189800--Sobic001G162900 Sobic002G189800--Sobic010G212600 Sobic002G189800--Sobic009G067200 Sobic002G008000 Sobic002G008000 Sobic002G189800--Sobic002G008000 Sobic002G223100 Sobic002G223100 Sobic002G189800--Sobic002G223100 Sobic009G053001 Sobic009G053001 Sobic002G189800--Sobic009G053001 Sobic004G303150 Sobic004G303150 Sobic002G189800--Sobic004G303150 Sobic001G162900--Sobic002G189800 Sobic001G162900--Sobic003G070300 Sobic001G162900--Sobic003G243400 Sobic001G162900--Sobic002G223100 Sobic001G162900--Sobic002G008000 Sobic001G162900--Sobic009G053001 Sobic001G162900--Sobic010G212600 Sobic009G239000 Sobic009G239000 Sobic001G162900--Sobic009G239000 Sobic001G162900--Sobic004G303150 Sobic003G243400--Sobic010G212600 Sobic002G044900 Sobic002G044900 Sobic003G243400--Sobic002G044900 Sobic003G243400--Sobic009G067200 Sobic002G267050 Sobic002G267050 Sobic003G243400--Sobic002G267050 Sobic002G401301 Sobic002G401301 Sobic003G243400--Sobic002G401301 Sobic003G243400--Sobic002G223100 Sobic001G152500 Sobic001G152500 Sobic003G243400--Sobic001G152500 Sobic003G243400--Sobic002G008000 Sobic005G135500 Sobic005G135500 Sobic003G243400--Sobic005G135500 Sobic006G229200--Sobic003G070300 Sobic006G229200--Sobic010G212600 Sobic006G229200--Sobic008G005400 Sobic006G229200--Sobic003G243400 Sobic004G046100 Sobic004G046100 Sobic006G229200--Sobic004G046100 Sobic003G414100 Sobic003G414100 Sobic006G229200--Sobic003G414100 Sobic006G229200--Sobic006G188100 Sobic010G272400 Sobic010G272400 Sobic006G229200--Sobic010G272400 Sobic006G229200--Sobic009G067200 Sobic003G193300--Sobic003G070300 Sobic005G099400 Sobic005G099400 Sobic003G193300--Sobic005G099400 Sobic001G264500 Sobic001G264500 Sobic003G193300--Sobic001G264500 Sobic003G164300 Sobic003G164300 Sobic003G193300--Sobic003G164300 Sobic001G135900 Sobic001G135900 Sobic003G193300--Sobic001G135900 Sobic004G022366 Sobic004G022366 Sobic003G193300--Sobic004G022366 Sobic003G193300--Sobic002G189800 Sobic005G201400 Sobic005G201400 Sobic003G193300--Sobic005G201400 Sobic002G213100 Sobic002G213100 Sobic003G193300--Sobic002G213100 Sobic010G212600--Sobic003G243400 Sobic010G212600--Sobic002G267050 Sobic010G212600--Sobic009G067200 Sobic010G212600--Sobic001G152500 Sobic010G212600--Sobic002G044900 Sobic010G212600--Sobic005G135500 Sobic010G212600--Sobic010G272400 Sobic008G053000 Sobic008G053000 Sobic010G212600--Sobic008G053000 Sobic010G212600--Sobic002G401301 Sobic009G067200--Sobic010G212600 Sobic009G067200--Sobic003G243400 Sobic004G290400 Sobic004G290400 Sobic009G067200--Sobic004G290400 Sobic009G067200--Sobic002G267050 Sobic001G022000 Sobic001G022000 Sobic009G067200--Sobic001G022000 Sobic009G067200--Sobic002G044900 Sobic009G067200--Sobic001G152500 Sobic009G067200--Sobic010G272400 Sobic002G384800 Sobic002G384800 Sobic009G067200--Sobic002G384800 Sobic010G108301 Sobic010G108301 Sobic008G005400--Sobic010G108301 Sobic002G267000 Sobic002G267000 Sobic008G005400--Sobic002G267000 Sobic008G005400--Sobic003G414100 Sobic007G138800 Sobic007G138800 Sobic008G005400--Sobic007G138800 Sobic008G005400--Sobic006G188100 Sobic005G135000 Sobic005G135000 Sobic008G005400--Sobic005G135000 Sobic010G108600 Sobic010G108600 Sobic008G005400--Sobic010G108600 Sobic010G108100 Sobic010G108100 Sobic008G005400--Sobic010G108100 Sobic001G173100 Sobic001G173100 Sobic008G005400--Sobic001G173100 Sobic006G188100--Sobic008G005400 Sobic006G188100--Sobic010G108301 Sobic006G188100--Sobic003G414100 Sobic006G188100--Sobic002G267000 Sobic001G510000 Sobic001G510000 Sobic006G188100--Sobic001G510000 Sobic006G188100--Sobic007G138800 Sobic006G188100--Sobic005G135000 Sobic006G188100--Sobic001G173100 Sobic006G188100--Sobic010G108600
Octagon: transcription factors


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