Gene annotation
Transcriptome id Sobic.001G264500.1
Synonym Sb01g025820, KCS1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
3-ketoacyl-CoA synthase, putative, expressed
UniProt C5WNZ0
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF1
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G01120 : 3-ketoacyl-CoA synthase 1
RAP-DB (Rice) LOC_Os03g14170.1 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a000930 , Zm00025a036645 , Zm00025a001551 , Zm00025a042702 , Zm00025a029505 , Zm00025a044614 , Zm00025a044659 , Zm00025a003809 , Zm00025a052892 , Zm00025a001341
Brachypodium PNT75706 , KQJ89024 , KQJ96727 , KQK18680 , PNT67097 , PNT77754 , PNT77755 , KQK22844 , KQK01599 , KQK17805 , KQK23304 , KQK23503
Barley HORVU6Hr1G073300.1 , HORVU4Hr1G076940.2 , HORVU4Hr1G067340.4 , HORVU1Hr1G089710.1 , HORVU1Hr1G089710.2 , HORVU1Hr1G089710.3 , HORVU1Hr1G086760.1 , HORVU7Hr1G084610.10 , HORVU7Hr1G084610.11 , HORVU4Hr1G067340.2 , HORVU4Hr1G067340.3 , HORVU4Hr1G067340.1 , HORVU7Hr1G084610.1 , HORVU7Hr1G084610.2 , HORVU7Hr1G084610.3 , HORVU7Hr1G084610.4 , HORVU7Hr1G084610.5 , HORVU7Hr1G084610.6 , HORVU7Hr1G084610.7 , HORVU7Hr1G084610.8 , HORVU7Hr1G084610.9 , HORVU1Hr1G090730.1 , HORVU7Hr1G006910.1 , HORVU4Hr1G076940.3 , HORVU4Hr1G063420.5 , HORVU4Hr1G063420.4 , HORVU4Hr1G063420.3 , HORVU4Hr1G063420.2 , HORVU4Hr1G063420.1
Wheat TraesCS6D02G071600 , TraesCS6A02G073300 , TraesCS6B02G373000 , TraesCS4A02G164400 , TraesCS6B02G098300 , TraesCS4D02G148300 , TraesCS4B02G297500 , TraesCS4A02G007400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G135900 transferase family protein, putative, expressed -
2 Sobic.002G213100 zinc finger, C3HC4 type family protein, expressed -
3 Sobic.003G192200 transporter family protein, putative, expressed -
4 Sobic.002G295600 - -
5 Sobic.005G125200 OsFBX313 - F-box domain containing protein, expressed -
6 Sobic.003G131900 expressed protein -
7 Sobic.008G023801 - -
8 Sobic.003G193600 expressed protein -
9 Sobic.004G079600 - -
10 Sobic.009G118100 vacuolar calcium binding protein, putative, expressed -
11 Sobic.003G444700 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
12 Sobic.003G315600 expressed protein -
13 Sobic.001G160900 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
14 Sobic.001G125600 - -
15 Sobic.001G474001 - -
16 Sobic.010G070100 serine threonine kinase, putative, expressed -
17 Sobic.005G098100 - -
18 Sobic.007G051200 cytidylyltransferase domain containing protein, expressed K00968: choline-phosphate cytidylyltransferase
19 Sobic.003G166001 - -
20 Sobic.001G120800 - -


Gene co-expression network
sample Sobic001G264500 Sobic001G264500 Sobic001G135900 Sobic001G135900 Sobic001G264500--Sobic001G135900 Sobic002G213100 Sobic002G213100 Sobic001G264500--Sobic002G213100 Sobic003G192200 Sobic003G192200 Sobic001G264500--Sobic003G192200 Sobic002G295600 Sobic002G295600 Sobic001G264500--Sobic002G295600 Sobic005G125200 Sobic005G125200 Sobic001G264500--Sobic005G125200 Sobic003G131900 Sobic003G131900 Sobic001G264500--Sobic003G131900 Sobic008G023801 Sobic008G023801 Sobic001G264500--Sobic008G023801 Sobic003G193600 Sobic003G193600 Sobic001G264500--Sobic003G193600 Sobic004G079600 Sobic004G079600 Sobic001G264500--Sobic004G079600 Sobic001G135900--Sobic002G213100 Sobic001G135900--Sobic003G193600 Sobic001G135900--Sobic004G079600 Sobic009G095640 Sobic009G095640 Sobic001G135900--Sobic009G095640 Sobic001G135900--Sobic005G125200 Sobic001G135900--Sobic003G192200 Sobic001G135900--Sobic002G295600 Sobic005G054501 Sobic005G054501 Sobic001G135900--Sobic005G054501 Sobic007G051200 Sobic007G051200 Sobic001G135900--Sobic007G051200 Sobic002G213100--Sobic001G135900 Sobic002G213100--Sobic003G193600 Sobic002G213100--Sobic009G095640 Sobic002G213100--Sobic004G079600 Sobic002G213100--Sobic005G054501 Sobic002G213100--Sobic002G295600 Sobic002G213100--Sobic007G051200 Sobic002G213100--Sobic005G125200 Sobic006G251100 Sobic006G251100 Sobic002G213100--Sobic006G251100 Sobic003G192200--Sobic003G131900 Sobic003G444700 Sobic003G444700 Sobic003G192200--Sobic003G444700 Sobic010G257900 Sobic010G257900 Sobic003G192200--Sobic010G257900 Sobic001G120800 Sobic001G120800 Sobic003G192200--Sobic001G120800 Sobic010G056900 Sobic010G056900 Sobic003G192200--Sobic010G056900 Sobic001G125600 Sobic001G125600 Sobic003G192200--Sobic001G125600 Sobic002G102600 Sobic002G102600 Sobic003G192200--Sobic002G102600 Sobic006G130900 Sobic006G130900 Sobic003G192200--Sobic006G130900 Sobic001G160900 Sobic001G160900 Sobic003G192200--Sobic001G160900 Sobic002G295600--Sobic002G213100 Sobic002G295600--Sobic009G095640 Sobic002G295600--Sobic005G054501 Sobic002G295600--Sobic003G193600 Sobic002G295600--Sobic004G079600 Sobic002G295600--Sobic001G135900 Sobic002G295600--Sobic007G051200 Sobic002G165900 Sobic002G165900 Sobic002G295600--Sobic002G165900 Sobic002G295600--Sobic006G251100 Sobic005G125200--Sobic001G160900 Sobic004G338900 Sobic004G338900 Sobic005G125200--Sobic004G338900 Sobic002G160200 Sobic002G160200 Sobic005G125200--Sobic002G160200 Sobic009G044200 Sobic009G044200 Sobic005G125200--Sobic009G044200 Sobic006G099200 Sobic006G099200 Sobic005G125200--Sobic006G099200 Sobic005G125200--Sobic003G193600 Sobic005G027250 Sobic005G027250 Sobic005G125200--Sobic005G027250 Sobic007G204800 Sobic007G204800 Sobic005G125200--Sobic007G204800 Sobic008G129800 Sobic008G129800 Sobic005G125200--Sobic008G129800 Sobic003G131900--Sobic003G444700 Sobic003G131900--Sobic003G192200 Sobic003G131900--Sobic010G257900 Sobic003G131900--Sobic010G056900 Sobic003G131900--Sobic002G102600 Sobic003G131900--Sobic001G120800 Sobic005G098100 Sobic005G098100 Sobic003G131900--Sobic005G098100 Sobic003G400700 Sobic003G400700 Sobic003G131900--Sobic003G400700 Sobic001G433500 Sobic001G433500 Sobic003G131900--Sobic001G433500 Sobic008G023801--Sobic010G056900 Sobic008G023801--Sobic003G192200 Sobic008G023801--Sobic003G131900 Sobic008G023801--Sobic003G444700 Sobic008G023801--Sobic010G257900 Sobic008G023801--Sobic002G102600 Sobic008G023801--Sobic005G098100 Sobic008G023801--Sobic001G125600 Sobic008G023801--Sobic001G120800 Sobic003G193600--Sobic007G051200 Sobic003G193600--Sobic008G129800 Sobic003G193600--Sobic004G079600 Sobic002G122500 Sobic002G122500 Sobic003G193600--Sobic002G122500 Sobic003G193600--Sobic006G251100 Sobic002G305800 Sobic002G305800 Sobic003G193600--Sobic002G305800 Sobic004G163900 Sobic004G163900 Sobic003G193600--Sobic004G163900 Sobic008G080700 Sobic008G080700 Sobic003G193600--Sobic008G080700 Sobic008G131300 Sobic008G131300 Sobic003G193600--Sobic008G131300 Sobic003G166001 Sobic003G166001 Sobic004G079600--Sobic003G166001 Sobic004G079600--Sobic007G051200 Sobic004G079600--Sobic003G193600 Sobic004G079600--Sobic008G080700 Sobic006G098900 Sobic006G098900 Sobic004G079600--Sobic006G098900 Sobic004G079600--Sobic006G251100 Sobic004G079600--Sobic002G305800 Sobic006G037100 Sobic006G037100 Sobic004G079600--Sobic006G037100 Sobic004G080600 Sobic004G080600 Sobic004G079600--Sobic004G080600
Octagon: transcription factors


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