Gene annotation
Transcriptome id Sobic.001G160900.1
Synonym Sb01g014055
Functional annotation signal recognition particle 54 kDa protein, putative, expressed
UniProt A0A1B6QJ80
Pfam PF02492 PF02881 PF02978
Panther DB PTHR11564 PTHR11564:SF5
NCBI CDD -
KEGG Orthology K03106; SRP54, signal recognition particle subunit SRP54
Gene Ontology GO:0006614; SRP-dependent cotranslational protein targeting to membrane GO:0005525GTP binding GO:00083127S RNA binding


Orthologs (automatic annotation)
TAIR AT1G48900 : Signal recognition particle, SRP54 subunit protein
RAP-DB (Rice) LOC_Os01g56600.1 : signal recognition particle 54 kDa protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G204800 receptor-like protein kinase 1, putative, expressed -
2 Sobic.002G160200 expressed protein -
3 Sobic.004G338900 P21-Rho-binding domain containing protein, putative, expressed -
4 Sobic.002G102600 - -
5 Sobic.005G125200 OsFBX313 - F-box domain containing protein, expressed -
6 Sobic.006G099200 pollen allergen Cyn d 23, putative, expressed -
7 Sobic.003G192200 transporter family protein, putative, expressed -
8 Sobic.001G120800 - -
9 Sobic.010G257900 peptidyl-prolyl cis-trans isomerase, putative, expressed -
10 Sobic.003G131900 expressed protein -
11 Sobic.005G098100 - -
12 Sobic.005G001200 - -
13 Sobic.002G083100 cadmium/zinc-transporting ATPase, putative, expressed K01534: Zn2+/Cd2+-exporting ATPase
14 Sobic.005G027250 - -
15 Sobic.003G444700 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
16 Sobic.001G125600 - -
17 Sobic.003G400700 CAMK_CAMK_like.39 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
18 Sobic.003G287800 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
19 Sobic.001G433500 expressed protein -
20 Sobic.008G129800 invertase/pectin methylesterase inhibitor family protein, putative, expressed -


Gene co-expression network
sample Sobic001G160900 Sobic001G160900 Sobic007G204800 Sobic007G204800 Sobic001G160900--Sobic007G204800 Sobic002G160200 Sobic002G160200 Sobic001G160900--Sobic002G160200 Sobic004G338900 Sobic004G338900 Sobic001G160900--Sobic004G338900 Sobic002G102600 Sobic002G102600 Sobic001G160900--Sobic002G102600 Sobic005G125200 Sobic005G125200 Sobic001G160900--Sobic005G125200 Sobic006G099200 Sobic006G099200 Sobic001G160900--Sobic006G099200 Sobic003G192200 Sobic003G192200 Sobic001G160900--Sobic003G192200 Sobic001G120800 Sobic001G120800 Sobic001G160900--Sobic001G120800 Sobic010G257900 Sobic010G257900 Sobic001G160900--Sobic010G257900 Sobic007G204800--Sobic002G160200 Sobic007G204800--Sobic004G338900 Sobic007G204800--Sobic006G099200 Sobic007G204800--Sobic001G160900 Sobic007G204800--Sobic001G120800 Sobic007G204800--Sobic002G102600 Sobic007G204800--Sobic010G257900 Sobic005G027250 Sobic005G027250 Sobic007G204800--Sobic005G027250 Sobic002G083100 Sobic002G083100 Sobic007G204800--Sobic002G083100 Sobic002G160200--Sobic002G102600 Sobic002G160200--Sobic007G204800 Sobic002G160200--Sobic004G338900 Sobic005G098100 Sobic005G098100 Sobic002G160200--Sobic005G098100 Sobic003G400700 Sobic003G400700 Sobic002G160200--Sobic003G400700 Sobic002G160200--Sobic001G160900 Sobic005G001200 Sobic005G001200 Sobic002G160200--Sobic005G001200 Sobic006G037100 Sobic006G037100 Sobic002G160200--Sobic006G037100 Sobic008G129800 Sobic008G129800 Sobic002G160200--Sobic008G129800 Sobic004G338900--Sobic002G160200 Sobic004G338900--Sobic007G204800 Sobic004G338900--Sobic001G160900 Sobic004G338900--Sobic006G099200 Sobic004G338900--Sobic002G083100 Sobic004G338900--Sobic002G102600 Sobic004G338900--Sobic005G027250 Sobic004G338900--Sobic005G001200 Sobic003G287800 Sobic003G287800 Sobic004G338900--Sobic003G287800 Sobic002G102600--Sobic005G098100 Sobic002G102600--Sobic002G160200 Sobic002G102600--Sobic003G400700 Sobic001G433500 Sobic001G433500 Sobic002G102600--Sobic001G433500 Sobic002G102600--Sobic006G037100 Sobic002G102600--Sobic005G001200 Sobic002G102600--Sobic003G287800 Sobic003G131900 Sobic003G131900 Sobic002G102600--Sobic003G131900 Sobic002G102600--Sobic007G204800 Sobic005G125200--Sobic001G160900 Sobic005G125200--Sobic004G338900 Sobic005G125200--Sobic002G160200 Sobic009G044200 Sobic009G044200 Sobic005G125200--Sobic009G044200 Sobic005G125200--Sobic006G099200 Sobic003G193600 Sobic003G193600 Sobic005G125200--Sobic003G193600 Sobic005G125200--Sobic005G027250 Sobic005G125200--Sobic007G204800 Sobic005G125200--Sobic008G129800 Sobic006G099200--Sobic005G027250 Sobic006G099200--Sobic007G204800 Sobic006G099200--Sobic004G338900 Sobic006G099200--Sobic009G044200 Sobic006G099200--Sobic001G160900 Sobic010G032200 Sobic010G032200 Sobic006G099200--Sobic010G032200 Sobic006G099200--Sobic002G160200 Sobic006G099200--Sobic002G083100 Sobic006G099200--Sobic001G120800 Sobic003G192200--Sobic003G131900 Sobic003G444700 Sobic003G444700 Sobic003G192200--Sobic003G444700 Sobic003G192200--Sobic010G257900 Sobic003G192200--Sobic001G120800 Sobic010G056900 Sobic010G056900 Sobic003G192200--Sobic010G056900 Sobic001G125600 Sobic001G125600 Sobic003G192200--Sobic001G125600 Sobic003G192200--Sobic002G102600 Sobic006G130900 Sobic006G130900 Sobic003G192200--Sobic006G130900 Sobic003G192200--Sobic001G160900 Sobic001G120800--Sobic010G257900 Sobic001G120800--Sobic006G130900 Sobic001G120800--Sobic003G444700 Sobic001G120800--Sobic007G204800 Sobic001G120800--Sobic003G131900 Sobic001G120800--Sobic010G056900 Sobic001G120800--Sobic003G192200 Sobic001G120800--Sobic002G102600 Sobic004G240700 Sobic004G240700 Sobic001G120800--Sobic004G240700 Sobic010G257900--Sobic001G120800 Sobic010G257900--Sobic003G444700 Sobic010G257900--Sobic006G130900 Sobic010G257900--Sobic010G056900 Sobic010G257900--Sobic003G131900 Sobic010G257900--Sobic007G204800 Sobic010G257900--Sobic003G192200 Sobic010G257900--Sobic002G102600 Sobic010G257900--Sobic001G125600
Octagon: transcription factors


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