Gene annotation
Transcriptome id Sobic.002G269500.1
Synonym (SbDREB1);dehydration response element binding (DREB) transcription factor, Sb02g030340, DREB1D, CBF4, dehydration response element binding (DREB) transcription factor, SbERF29, (SbDREB1);ethylene response factor 29
Functional annotation "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. " (PubMedID : 24086146)
SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
Not investigated (PubMedID : 23766026)
dehydration-responsive element-binding protein, putative, expressed
UniProt C5X628
Pfam PF00847
Panther DB PTHR31839:SF10 PTHR31839
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003700; DNA-binding transcription factor activity GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G51990 : C-repeat-binding factor 4
RAP-DB (Rice) LOC_Os09g35030.1 : dehydration-responsive element-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a028188 , Zm00025a014384 , Zm00025a047706 , Zm00025a047703 , Zm00025a022123 , Zm00025a033171
Brachypodium KQJ91104 , PNT64988 , KQK00491 , KQJ91103 , KQK11455
Barley HORVU6Hr1G089320.1 , HORVU6Hr1G074970.3 , HORVU6Hr1G074970.2 , HORVU6Hr1G074970.1 , HORVU5Hr1G080240.1 , HORVU5Hr1G080420.1 , HORVU7Hr1G037180.2 , HORVU7Hr1G037180.1
Wheat TraesCS5D02G317000 , TraesCS2A02G373700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G082200 cytochrome P450, putative, expressed -
2 Sobic.001G018300 cytochrome P450 71E1, putative, expressed -
3 Sobic.002G326100 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
4 Sobic.001G317000 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
5 Sobic.004G088551 - -
6 Sobic.007G155100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
7 Sobic.004G243100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.001G231400 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
9 Sobic.001G423800 DNA binding protein, putative, expressed -
10 Sobic.004G112300 - -
11 Sobic.010G042500 expressed protein -
12 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
13 Sobic.010G238600 transferase family protein, putative, expressed -
14 Sobic.001G365100 lipase, putative, expressed -
15 Sobic.010G259500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
16 Sobic.010G066700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein anthranilate N-benzoyltransferase protein 1 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
17 Sobic.002G263400 expressed protein -
18 Sobic.002G184200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
19 Sobic.002G139400 AP2 domain containing protein, expressed -
20 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G269500 Sobic002G269500 Sobic001G082200 Sobic001G082200 Sobic002G269500--Sobic001G082200 Sobic001G018300 Sobic001G018300 Sobic002G269500--Sobic001G018300 Sobic002G326100 Sobic002G326100 Sobic002G269500--Sobic002G326100 Sobic001G317000 Sobic001G317000 Sobic002G269500--Sobic001G317000 Sobic004G088551 Sobic004G088551 Sobic002G269500--Sobic004G088551 Sobic007G155100 Sobic007G155100 Sobic002G269500--Sobic007G155100 Sobic004G243100 Sobic004G243100 Sobic002G269500--Sobic004G243100 Sobic001G231400 Sobic001G231400 Sobic002G269500--Sobic001G231400 Sobic001G423800 Sobic001G423800 Sobic002G269500--Sobic001G423800 Sobic001G192200 Sobic001G192200 Sobic001G082200--Sobic001G192200 Sobic001G082200--Sobic001G423800 Sobic002G139400 Sobic002G139400 Sobic001G082200--Sobic002G139400 Sobic001G082200--Sobic004G088551 Sobic010G238600 Sobic010G238600 Sobic001G082200--Sobic010G238600 Sobic001G082200--Sobic004G243100 Sobic003G078100 Sobic003G078100 Sobic001G082200--Sobic003G078100 Sobic009G224100 Sobic009G224100 Sobic001G082200--Sobic009G224100 Sobic009G070400 Sobic009G070400 Sobic001G082200--Sobic009G070400 Sobic001G018300--Sobic004G243100 Sobic001G018300--Sobic001G231400 Sobic002G192000 Sobic002G192000 Sobic001G018300--Sobic002G192000 Sobic001G318700 Sobic001G318700 Sobic001G018300--Sobic001G318700 Sobic001G018300--Sobic001G423800 Sobic002G263400 Sobic002G263400 Sobic001G018300--Sobic002G263400 Sobic004G229800 Sobic004G229800 Sobic001G018300--Sobic004G229800 Sobic001G367600 Sobic001G367600 Sobic001G018300--Sobic001G367600 Sobic001G018300--Sobic007G155100 Sobic002G326100--Sobic001G367600 Sobic004G112300 Sobic004G112300 Sobic002G326100--Sobic004G112300 Sobic002G326100--Sobic004G243100 Sobic003G417350 Sobic003G417350 Sobic002G326100--Sobic003G417350 Sobic001G038900 Sobic001G038900 Sobic002G326100--Sobic001G038900 Sobic002G326100--Sobic002G192000 Sobic002G326100--Sobic001G231400 Sobic002G326100--Sobic001G423800 Sobic005G029200 Sobic005G029200 Sobic002G326100--Sobic005G029200 Sobic001G317000--Sobic004G088551 Sobic001G317000--Sobic001G423800 Sobic006G275200 Sobic006G275200 Sobic001G317000--Sobic006G275200 Sobic001G119400 Sobic001G119400 Sobic001G317000--Sobic001G119400 Sobic002G195400 Sobic002G195400 Sobic001G317000--Sobic002G195400 Sobic001G097600 Sobic001G097600 Sobic001G317000--Sobic001G097600 Sobic002G261000 Sobic002G261000 Sobic001G317000--Sobic002G261000 Sobic009G183400 Sobic009G183400 Sobic001G317000--Sobic009G183400 Sobic001G317000--Sobic001G038900 Sobic004G088551--Sobic001G317000 Sobic004G088551--Sobic002G195400 Sobic005G101800 Sobic005G101800 Sobic004G088551--Sobic005G101800 Sobic007G067600 Sobic007G067600 Sobic004G088551--Sobic007G067600 Sobic010G117900 Sobic010G117900 Sobic004G088551--Sobic010G117900 Sobic001G317200 Sobic001G317200 Sobic004G088551--Sobic001G317200 Sobic004G088551--Sobic001G423800 Sobic007G061300 Sobic007G061300 Sobic004G088551--Sobic007G061300 Sobic004G088551--Sobic004G112300 Sobic007G155100--Sobic001G423800 Sobic001G402200 Sobic001G402200 Sobic007G155100--Sobic001G402200 Sobic007G155100--Sobic001G018300 Sobic001G365100 Sobic001G365100 Sobic007G155100--Sobic001G365100 Sobic007G155100--Sobic004G243100 Sobic006G084600 Sobic006G084600 Sobic007G155100--Sobic006G084600 Sobic010G066700 Sobic010G066700 Sobic007G155100--Sobic010G066700 Sobic004G221500 Sobic004G221500 Sobic007G155100--Sobic004G221500 Sobic002G184200 Sobic002G184200 Sobic007G155100--Sobic002G184200 Sobic004G243100--Sobic001G018300 Sobic004G243100--Sobic001G231400 Sobic004G243100--Sobic009G224100 Sobic004G243100--Sobic001G423800 Sobic004G243100--Sobic002G139400 Sobic004G243100--Sobic002G192000 Sobic002G251000 Sobic002G251000 Sobic004G243100--Sobic002G251000 Sobic003G282901 Sobic003G282901 Sobic004G243100--Sobic003G282901 Sobic004G243100--Sobic002G263400 Sobic001G231400--Sobic001G018300 Sobic001G231400--Sobic004G243100 Sobic001G231400--Sobic002G192000 Sobic001G231400--Sobic002G251000 Sobic001G231400--Sobic001G318700 Sobic001G231400--Sobic002G263400 Sobic009G145500 Sobic009G145500 Sobic001G231400--Sobic009G145500 Sobic001G231400--Sobic001G367600 Sobic001G231400--Sobic002G139400 Sobic001G423800--Sobic004G243100 Sobic002G140400 Sobic002G140400 Sobic001G423800--Sobic002G140400 Sobic001G423800--Sobic001G038900 Sobic001G423800--Sobic001G119400 Sobic001G423800--Sobic001G018300 Sobic001G423800--Sobic007G155100 Sobic008G136400 Sobic008G136400 Sobic001G423800--Sobic008G136400 Sobic002G393000 Sobic002G393000 Sobic001G423800--Sobic002G393000 Sobic004G189400 Sobic004G189400 Sobic001G423800--Sobic004G189400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.