Gene annotation
Transcriptome id Sobic.002G290600.1
Synonym ARF10, Sb02g032210, auxin response factor, SbARF2
Functional annotation "domain confirmed by Pfam database, expression induced by BR treatment" (PubMedID : 20499123)
auxin response factor, putative, expressed
UniProt A0A1B6QE14
Pfam PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0009725response to hormone GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G30080 : auxin response factor 16
RAP-DB (Rice) LOC_Os04g43910.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a006580
Brachypodium KQJ83629
Barley HORVU2Hr1G089670.1 , HORVU2Hr1G089670.2 , HORVU2Hr1G089670.3 , HORVU2Hr1G089670.4 , HORVU2Hr1G089670.5 , HORVU2Hr1G089660.8
Wheat TraesCS1A02G156600 , TraesCS1B02G173700 , TraesCS2D02G376600 , TraesCS1D02G155100 , TraesCS2A02G380300 , TraesCS2B02G397300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G043300 expressed protein -
2 Sobic.005G006701 - -
3 Sobic.007G010350 - -
4 Sobic.009G067100 cytochrome P450, putative, expressed -
5 Sobic.001G092650 - -
6 Sobic.007G219300 BURP domain containing protein, expressed -
7 Sobic.006G067300 OsFBX103 - F-box domain containing protein, expressed -
8 Sobic.004G089400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
9 Sobic.003G180700 major facilitator superfamily antiporter, putative, expressed -
10 Sobic.001G355300 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
11 Sobic.003G164300 cullin, putative, expressed K03347: CUL1, cullin 1
12 Sobic.008G057500 Aldehyde dehydrogenase 3 H1(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
13 Sobic.001G092700 - -
14 Sobic.007G083500 speckle-type POZ protein, putative, expressed K10523: speckle-type POZ protein
15 Sobic.004G149200 ankyrin, putative, expressed -
16 Sobic.009G180300 LTPL61 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
17 Sobic.002G121100 OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
18 Sobic.002G298500 LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
19 Sobic.005G125400 C4-dicarboxylate transporter/malic acid transport protein, expressed -
20 Sobic.006G018000 expressed protein -


Gene co-expression network
sample Sobic002G290600 Sobic002G290600 Sobic010G043300 Sobic010G043300 Sobic002G290600--Sobic010G043300 Sobic005G006701 Sobic005G006701 Sobic002G290600--Sobic005G006701 Sobic007G010350 Sobic007G010350 Sobic002G290600--Sobic007G010350 Sobic009G067100 Sobic009G067100 Sobic002G290600--Sobic009G067100 Sobic001G092650 Sobic001G092650 Sobic002G290600--Sobic001G092650 Sobic007G219300 Sobic007G219300 Sobic002G290600--Sobic007G219300 Sobic006G067300 Sobic006G067300 Sobic002G290600--Sobic006G067300 Sobic004G089400 Sobic004G089400 Sobic002G290600--Sobic004G089400 Sobic003G180700 Sobic003G180700 Sobic002G290600--Sobic003G180700 Sobic010G043300--Sobic005G006701 Sobic010G043300--Sobic007G219300 Sobic010G043300--Sobic007G010350 Sobic010G043300--Sobic001G092650 Sobic010G043300--Sobic003G180700 Sobic001G355300 Sobic001G355300 Sobic010G043300--Sobic001G355300 Sobic001G092700 Sobic001G092700 Sobic010G043300--Sobic001G092700 Sobic010G043300--Sobic009G067100 Sobic007G083500 Sobic007G083500 Sobic010G043300--Sobic007G083500 Sobic005G006701--Sobic004G089400 Sobic005G006701--Sobic010G043300 Sobic004G149200 Sobic004G149200 Sobic005G006701--Sobic004G149200 Sobic005G006701--Sobic007G010350 Sobic005G006701--Sobic006G067300 Sobic002G260100 Sobic002G260100 Sobic005G006701--Sobic002G260100 Sobic005G006701--Sobic001G092700 Sobic003G062900 Sobic003G062900 Sobic005G006701--Sobic003G062900 Sobic003G164300 Sobic003G164300 Sobic005G006701--Sobic003G164300 Sobic007G010350--Sobic010G043300 Sobic007G010350--Sobic005G006701 Sobic007G010350--Sobic003G164300 Sobic007G010350--Sobic007G219300 Sobic007G010350--Sobic001G092650 Sobic007G010350--Sobic003G180700 Sobic007G010350--Sobic001G355300 Sobic007G010350--Sobic001G092700 Sobic007G010350--Sobic009G067100 Sobic009G067100--Sobic007G083500 Sobic009G067100--Sobic003G180700 Sobic009G067100--Sobic001G355300 Sobic009G067100--Sobic007G219300 Sobic002G298500 Sobic002G298500 Sobic009G067100--Sobic002G298500 Sobic009G067100--Sobic001G092650 Sobic006G018000 Sobic006G018000 Sobic009G067100--Sobic006G018000 Sobic009G067100--Sobic010G043300 Sobic006G124500 Sobic006G124500 Sobic009G067100--Sobic006G124500 Sobic001G092650--Sobic007G219300 Sobic001G092650--Sobic003G180700 Sobic001G092650--Sobic001G355300 Sobic001G092650--Sobic009G067100 Sobic001G092650--Sobic007G083500 Sobic001G092650--Sobic010G043300 Sobic001G092650--Sobic002G298500 Sobic001G092650--Sobic001G092700 Sobic001G092650--Sobic007G010350 Sobic007G219300--Sobic003G180700 Sobic007G219300--Sobic001G355300 Sobic007G219300--Sobic009G067100 Sobic007G219300--Sobic007G083500 Sobic007G219300--Sobic001G092650 Sobic007G219300--Sobic002G298500 Sobic007G219300--Sobic010G043300 Sobic007G219300--Sobic006G018000 Sobic005G125400 Sobic005G125400 Sobic007G219300--Sobic005G125400 Sobic006G067300--Sobic005G006701 Sobic006G067300--Sobic003G164300 Sobic006G067300--Sobic004G089400 Sobic006G067300--Sobic010G043300 Sobic009G180300 Sobic009G180300 Sobic006G067300--Sobic009G180300 Sobic006G067300--Sobic004G149200 Sobic006G067300--Sobic007G010350 Sobic008G057500 Sobic008G057500 Sobic006G067300--Sobic008G057500 Sobic006G067300--Sobic001G092700 Sobic004G089400--Sobic005G006701 Sobic004G089400--Sobic004G149200 Sobic004G089400--Sobic003G062900 Sobic004G089400--Sobic010G043300 Sobic004G089400--Sobic002G260100 Sobic006G059400 Sobic006G059400 Sobic004G089400--Sobic006G059400 Sobic004G089400--Sobic006G067300 Sobic003G070200 Sobic003G070200 Sobic004G089400--Sobic003G070200 Sobic001G359100 Sobic001G359100 Sobic004G089400--Sobic001G359100 Sobic003G180700--Sobic001G355300 Sobic003G180700--Sobic007G219300 Sobic003G180700--Sobic009G067100 Sobic003G180700--Sobic007G083500 Sobic003G180700--Sobic002G298500 Sobic003G180700--Sobic001G092650 Sobic003G180700--Sobic006G018000 Sobic003G180700--Sobic010G043300 Sobic003G180700--Sobic005G125400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.