Gene annotation
| Transcriptome id | Sobic.002G315900.1 |
|---|---|
| Synonym | Sb02g034500, ATG8C |
| Functional annotation | autophagy-related protein, putative, expressed |
| UniProt | C5X9Z1 |
| Pfam | PF04110 |
| Panther DB | PTHR10969 PTHR10969:SF32 |
| NCBI CDD | KOG1654; Microtubule-associated anchor protein involved in autophagy and membrane trafficking |
| KEGG Orthology | K08341; GABARAP, ATG8, GABA(A) receptor-associated protein |
| Gene Ontology | GO:0005737; cytoplasm GO:0000045autophagosome assembly |
Orthologs (automatic annotation)
| TAIR | AT1G62040 : Ubiquitin-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g32800.1 : autophagy-related protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a014766 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G140850 | - | - |
| 2 | Sobic.004G140850 | - | - |
| 3 | Sobic.004G140850 | - | - |
| 4 | Sobic.002G379201 | - | - |
| 5 | Sobic.004G340200 | dehydrogenase, putative, expressed | K09753: cinnamoyl-CoA reductase |
| 6 | Sobic.007G066900 | Cupin domain containing protein, expressed | - |
| 7 | Sobic.007G067608 | - | - |
| 8 | Sobic.004G210700 | ATOZI1, putative, expressed | - |
| 9 | Sobic.010G032000 | Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed | - |
| 10 | Sobic.008G149900 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 11 | Sobic.001G237400 | heavy-metal-associated domain-containing protein, putative, expressed | - |
| 12 | Sobic.002G242650 | - | - |
| 13 | Sobic.009G123400 | - | - |
| 14 | Sobic.005G215601 | - | - |
| 15 | Sobic.007G066500 | Cupin domain containing protein, expressed | - |
| 16 | Sobic.001G436800 | expressed protein | - |
| 17 | Sobic.004G220500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phenylalanine ammonia-lyase, putative, expressed | K10775: phenylalanine ammonia-lyase |
| 18 | Sobic.003G293500 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock protein 101, putative, expressed | K03695: ATP-dependent Clp protease ATP-binding subunit ClpB |
| 19 | Sobic.010G031100 | Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed | - |
| 20 | Sobic.008G036200 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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