Gene annotation
Transcriptome id Sobic.004G220500.1
Synonym Sb04g026530, ATPAL1, PAL1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
phenylalanine ammonia-lyase, putative, expressed
UniProt -
Pfam PF00221
Panther DB PTHR10362 PTHR10362:SF16
NCBI CDD -
KEGG Orthology K10775; phenylalanine ammonia-lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37040 : PHE ammonia lyase 1
RAP-DB (Rice) LOC_Os02g41680.1 : phenylalanine ammonia-lyase, putative, expressed
MaizeGDB (Corn) Zm00025a021097 , Zm00025a021100 , Zm00025a021102 , Zm00025a021099 , Zm00025a032035 , Zm00025a032034 , Zm00025a047442 , Zm00025a032030 , Zm00025a007342 , Zm00025a010654 , Zm00025a010653
Brachypodium KQJ83619 , KQK00414 , KQK00065 , KQK00064 , KQK00416 , KQK00417 , KQK00357 , KQK00415
Barley HORVU0Hr1G016330.10 , HORVU6Hr1G058820.1 , HORVU2Hr1G038140.4 , HORVU2Hr1G038140.5 , HORVU2Hr1G038140.2 , HORVU2Hr1G038140.3 , HORVU2Hr1G038140.1 , HORVU2Hr1G089540.1 , HORVU2Hr1G089440.17 , HORVU2Hr1G089440.16 , HORVU2Hr1G089440.15 , HORVU2Hr1G089440.11 , HORVU2Hr1G089440.10 , HORVU2Hr1G089440.9 , HORVU2Hr1G089440.8 , HORVU2Hr1G089440.6 , HORVU2Hr1G089440.5 , HORVU2Hr1G089440.4 , HORVU2Hr1G089440.3 , HORVU2Hr1G089440.2 , HORVU2Hr1G089440.1 , HORVU6Hr1G058840.1 , HORVU1Hr1G022060.1 , HORVU1Hr1G022060.2 , HORVU2Hr1G038120.4 , HORVU2Hr1G038120.5 , HORVU2Hr1G038120.6 , HORVU6Hr1G058820.4 , HORVU6Hr1G058820.3 , HORVU2Hr1G038120.1 , HORVU2Hr1G038120.2 , HORVU2Hr1G038120.3 , HORVU6Hr1G058820.9 , HORVU6Hr1G058820.8 , HORVU6Hr1G058820.7 , HORVU6Hr1G058820.6 , HORVU6Hr1G058820.12 , HORVU6Hr1G058820.5 , HORVU6Hr1G058820.11 , HORVU6Hr1G058820.10 , HORVU0Hr1G016330.3 , HORVU0Hr1G016330.2 , HORVU0Hr1G016330.1 , HORVU6Hr1G058840.2 , HORVU0Hr1G016330.7 , HORVU0Hr1G016330.6 , HORVU0Hr1G016330.5 , HORVU0Hr1G016330.4 , HORVU0Hr1G016330.9 , HORVU0Hr1G016330.8 , HORVU6Hr1G058820.2
Wheat TraesCS1D02G039300 , TraesCS1D02G039400 , TraesCS2D02G377400 , TraesCS2D02G377200 , TraesCS6A02G222900 , TraesCS1B02G048300 , TraesCS2B02G398200 , TraesCS2B02G398000 , TraesCS2B02G398000 , TraesCS1D02G039500 , TraesCS5B02G468300 , TraesCS2D02G377600 , TraesCS4A02G401300 , TraesCS2A02G381000 , TraesCS2A02G381100 , TraesCS2A02G380800 , TraesCS1B02G048400 , TraesCS1B02G048400 , TraesCS1B02G048500 , TraesCS1B02G048500 , TraesCS2B02G398400 , TraesCS2A02G380900 , TraesCS1B02G048200 , TraesCS6D02G212200 , TraesCS6D02G212200 , TraesCS2B02G398100 , TraesCS2B02G398300 , TraesCS2B02G398300 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS3D02G016300 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS1B02G048100 , TraesCS1B02G048100 , TraesCS1A02G037800 , TraesCS6A02G222800 , TraesCS6B02G258500 , TraesCS6B02G258500 , TraesCS2D02G377500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G140850 - -
2 Sobic.004G140850 - -
3 Sobic.004G140850 - -
4 Sobic.007G067608 - -
5 Sobic.008G149900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G379201 - -
7 Sobic.007G066900 Cupin domain containing protein, expressed -
8 Sobic.007G066500 Cupin domain containing protein, expressed -
9 Sobic.001G237400 heavy-metal-associated domain-containing protein, putative, expressed -
10 Sobic.002G315900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
11 Sobic.004G210700 ATOZI1, putative, expressed -
12 Sobic.003G175400 ribosomal protein L7Ae, putative, expressed -
13 Sobic.004G340200 dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
14 Sobic.010G032000 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
15 Sobic.007G066600 Cupin domain containing protein, expressed -
16 Sobic.007G066800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
17 Sobic.010G075500 expressed protein -
18 Sobic.005G215601 - -
19 Sobic.009G123400 - -
20 Sobic.002G268966 - -


Gene co-expression network
sample Sobic004G220500 Sobic004G220500 Sobic004G140850 Sobic004G140850 Sobic004G220500--Sobic004G140850 Sobic007G067608 Sobic007G067608 Sobic004G220500--Sobic007G067608 Sobic008G149900 Sobic008G149900 Sobic004G220500--Sobic008G149900 Sobic002G379201 Sobic002G379201 Sobic004G220500--Sobic002G379201 Sobic007G066900 Sobic007G066900 Sobic004G220500--Sobic007G066900 Sobic007G066500 Sobic007G066500 Sobic004G220500--Sobic007G066500 Sobic001G237400 Sobic001G237400 Sobic004G220500--Sobic001G237400 Sobic004G140850--Sobic004G140850 Sobic004G140850--Sobic007G066900 Sobic004G140850--Sobic002G379201 Sobic004G340200 Sobic004G340200 Sobic004G140850--Sobic004G340200 Sobic002G315900 Sobic002G315900 Sobic004G140850--Sobic002G315900 Sobic004G140850--Sobic007G067608 Sobic004G210700 Sobic004G210700 Sobic004G140850--Sobic004G210700 Sobic004G140850--Sobic008G149900 Sobic007G067608--Sobic007G066500 Sobic007G067608--Sobic001G237400 Sobic007G067608--Sobic007G066900 Sobic007G066600 Sobic007G066600 Sobic007G067608--Sobic007G066600 Sobic007G067608--Sobic004G140850 Sobic007G067608--Sobic004G210700 Sobic007G066800 Sobic007G066800 Sobic007G067608--Sobic007G066800 Sobic008G149900--Sobic004G340200 Sobic008G149900--Sobic004G140850 Sobic005G215601 Sobic005G215601 Sobic008G149900--Sobic005G215601 Sobic008G149900--Sobic004G210700 Sobic008G149900--Sobic007G066900 Sobic010G032000 Sobic010G032000 Sobic008G149900--Sobic010G032000 Sobic009G123400 Sobic009G123400 Sobic008G149900--Sobic009G123400 Sobic002G379201--Sobic001G237400 Sobic002G379201--Sobic004G140850 Sobic002G379201--Sobic007G067608 Sobic002G379201--Sobic007G066900 Sobic002G379201--Sobic004G340200 Sobic002G379201--Sobic002G315900 Sobic002G379201--Sobic004G210700 Sobic007G066900--Sobic007G067608 Sobic007G066900--Sobic010G032000 Sobic007G066900--Sobic004G210700 Sobic007G066900--Sobic004G340200 Sobic007G066900--Sobic004G140850 Sobic007G066900--Sobic009G123400 Sobic007G066900--Sobic007G066500 Sobic007G066500--Sobic007G066600 Sobic007G066500--Sobic007G067608 Sobic007G066500--Sobic007G066800 Sobic007G066500--Sobic001G237400 Sobic007G066500--Sobic007G066900 Sobic007G066824 Sobic007G066824 Sobic007G066500--Sobic007G066824 Sobic007G066500--Sobic004G210700 Sobic007G066500--Sobic004G140850 Sobic001G237400--Sobic007G067608 Sobic001G237400--Sobic002G379201 Sobic001G237400--Sobic007G066500 Sobic001G237400--Sobic007G066800 Sobic001G237400--Sobic007G066900 Sobic001G237400--Sobic007G066600 Sobic001G237400--Sobic004G210700 Sobic001G237400--Sobic004G140850
Octagon: transcription factors


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