Gene annotation
Transcriptome id Sobic.003G062500.1,Sobic.003G062500.2
Synonym ATPP2A-1, Sb03g005330, ATPP2-A1, PP2-A1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PHLOEM 2-LIKE A5, putative, expressed
UniProt A0A1B6Q1N9 , A0A1B6Q1L1
Pfam PF14299
Panther DB PTHR32278 PTHR32278:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19840 : phloem protein 2-A1
RAP-DB (Rice) LOC_Os01g06500.1,LOC_Os01g06500.2 : PHLOEM 2-LIKE A5, putative, expressed
MaizeGDB (Corn) Zm00025a035662
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G264900 aminotransferase, classes I and II, domain containing protein, expressed K00817: histidinol-phosphate aminotransferase
2 Sobic.004G107800 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
3 Sobic.003G251200 S-locus-like receptor protein kinase, putative, expressed -
4 Sobic.007G055900 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
5 Sobic.001G170600 OsFBX85 - F-box domain containing protein, expressed -
6 Sobic.002G348300 expressed protein -
7 Sobic.007G014500 NB-ARC domain containing protein, expressed -
8 Sobic.009G091940 - -
9 Sobic.004G262550 - -
10 Sobic.001G134000 - -
11 Sobic.002G319900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA family ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
12 Sobic.003G389150 - -
13 Sobic.003G068100 receptor kinase, putative, expressed -
14 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
15 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
16 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
17 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
18 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
19 Sobic.003G267150 - -
20 Sobic.007G132300 inactive receptor kinase At2g26730 precursor, putative, expressed -


Gene co-expression network
sample Sobic003G062500 Sobic003G062500 Sobic004G264900 Sobic004G264900 Sobic003G062500--Sobic004G264900 Sobic004G107800 Sobic004G107800 Sobic003G062500--Sobic004G107800 Sobic003G251200 Sobic003G251200 Sobic003G062500--Sobic003G251200 Sobic007G055900 Sobic007G055900 Sobic003G062500--Sobic007G055900 Sobic001G170600 Sobic001G170600 Sobic003G062500--Sobic001G170600 Sobic002G348300 Sobic002G348300 Sobic003G062500--Sobic002G348300 Sobic007G014500 Sobic007G014500 Sobic003G062500--Sobic007G014500 Sobic009G091940 Sobic009G091940 Sobic003G062500--Sobic009G091940 Sobic004G262550 Sobic004G262550 Sobic003G062500--Sobic004G262550 Sobic006G099400 Sobic006G099400 Sobic004G264900--Sobic006G099400 Sobic009G115800 Sobic009G115800 Sobic004G264900--Sobic009G115800 Sobic006G159500 Sobic006G159500 Sobic004G264900--Sobic006G159500 Sobic003G261766 Sobic003G261766 Sobic004G264900--Sobic003G261766 Sobic004G264900--Sobic004G262550 Sobic005G041150 Sobic005G041150 Sobic004G264900--Sobic005G041150 Sobic002G160500 Sobic002G160500 Sobic004G264900--Sobic002G160500 Sobic004G107800--Sobic003G062500 Sobic008G027400 Sobic008G027400 Sobic004G107800--Sobic008G027400 Sobic003G263701 Sobic003G263701 Sobic004G107800--Sobic003G263701 Sobic004G107800--Sobic004G264900 Sobic003G109000 Sobic003G109000 Sobic004G107800--Sobic003G109000 Sobic005G052300 Sobic005G052300 Sobic004G107800--Sobic005G052300 Sobic008G027500 Sobic008G027500 Sobic004G107800--Sobic008G027500 Sobic005G230100 Sobic005G230100 Sobic004G107800--Sobic005G230100 Sobic001G134000 Sobic001G134000 Sobic004G107800--Sobic001G134000 Sobic003G068100 Sobic003G068100 Sobic003G251200--Sobic003G068100 Sobic006G083050 Sobic006G083050 Sobic003G251200--Sobic006G083050 Sobic008G142500 Sobic008G142500 Sobic003G251200--Sobic008G142500 Sobic005G116800 Sobic005G116800 Sobic003G251200--Sobic005G116800 Sobic003G251200--Sobic005G041150 Sobic003G067900 Sobic003G067900 Sobic003G251200--Sobic003G067900 Sobic009G134700 Sobic009G134700 Sobic003G251200--Sobic009G134700 Sobic010G156300 Sobic010G156300 Sobic003G251200--Sobic010G156300 Sobic001G326500 Sobic001G326500 Sobic003G251200--Sobic001G326500 Sobic003G315166 Sobic003G315166 Sobic007G055900--Sobic003G315166 Sobic007G055900--Sobic002G348300 Sobic002G334100 Sobic002G334100 Sobic007G055900--Sobic002G334100 Sobic004G188100 Sobic004G188100 Sobic007G055900--Sobic004G188100 Sobic008G078800 Sobic008G078800 Sobic007G055900--Sobic008G078800 Sobic001G292100 Sobic001G292100 Sobic007G055900--Sobic001G292100 Sobic007G042600 Sobic007G042600 Sobic007G055900--Sobic007G042600 Sobic010G013000 Sobic010G013000 Sobic007G055900--Sobic010G013000 Sobic004G187600 Sobic004G187600 Sobic007G055900--Sobic004G187600 Sobic001G170600--Sobic009G091940 Sobic001G170600--Sobic002G160500 Sobic003G267150 Sobic003G267150 Sobic001G170600--Sobic003G267150 Sobic001G170600--Sobic004G262550 Sobic003G389150 Sobic003G389150 Sobic001G170600--Sobic003G389150 Sobic002G348300--Sobic007G055900 Sobic002G348300--Sobic003G315166 Sobic002G218800 Sobic002G218800 Sobic002G348300--Sobic002G218800 Sobic006G090900 Sobic006G090900 Sobic002G348300--Sobic006G090900 Sobic010G066100 Sobic010G066100 Sobic002G348300--Sobic010G066100 Sobic002G348300--Sobic002G334100 Sobic002G348300--Sobic004G188100 Sobic010G019600 Sobic010G019600 Sobic002G348300--Sobic010G019600 Sobic001G094800 Sobic001G094800 Sobic002G348300--Sobic001G094800 Sobic002G319900 Sobic002G319900 Sobic007G014500--Sobic002G319900 Sobic007G014500--Sobic004G262550 Sobic007G014500--Sobic003G267150 Sobic007G014500--Sobic002G160500 Sobic004G313000 Sobic004G313000 Sobic007G014500--Sobic004G313000 Sobic009G091940--Sobic002G160500 Sobic009G091940--Sobic003G267150 Sobic009G091940--Sobic004G262550 Sobic009G091940--Sobic003G389150 Sobic009G091940--Sobic004G313000 Sobic004G262550--Sobic002G160500 Sobic004G262550--Sobic003G267150 Sobic004G262550--Sobic009G091940 Sobic004G262550--Sobic003G389150 Sobic004G262550--Sobic004G313000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.