Gene annotation
Transcriptome id Sobic.003G149600.1
Synonym Sb03g012990
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
FAD dependent oxidoreductase domain containing protein, expressed
UniProt C5XIV6
Pfam PF01134
Panther DB PTHR10961 PTHR10961:SF22
NCBI CDD KOG2820; FAD-dependent oxidoreductase
KEGG Orthology K00306; sarcosine oxidase / L-pipecolate oxidase
Gene Ontology GO:0008033; tRNA processing


Orthologs (automatic annotation)
TAIR AT2G24580 : FAD-dependent oxidoreductase family protein
RAP-DB (Rice) LOC_Os01g21380.1 : FAD dependent oxidoreductase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025908 , Zm00025a023879 , Zm00025a036118 , Zm00025a047510
Brachypodium KQK04148
Barley -
Wheat TraesCS5B02G276000 , TraesCS5A02G276400
Populus -


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cDNA sequences
Sobic.003G149600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G051201 - -
2 Sobic.007G127700 DUF581 domain containing protein, expressed -
3 Sobic.007G209700 - -
4 Sobic.002G234100 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
5 Sobic.003G378700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DnaK family protein, putative, expressed K09490: HSPA5, endoplasmic reticulum chaperone BiP
6 Sobic.010G020100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
7 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
8 Sobic.007G054700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
9 Sobic.002G217000 expressed protein -
10 Sobic.002G058900 OsFBX237 - F-box domain containing protein, expressed -
11 Sobic.010G111400 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
12 Sobic.003G213100 AAA-type ATPase family protein, putative, expressed -
13 Sobic.003G225800 AAA-type ATPase family protein, putative, expressed -
14 Sobic.002G069800 OsFBX221 - F-box domain containing protein, expressed -
15 Sobic.001G401975 - -
16 Sobic.005G197000 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
17 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
18 Sobic.002G086500 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
19 Sobic.003G291100 - -
20 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma


Gene co-expression network
sample Sobic003G149600 Sobic003G149600 Sobic009G051201 Sobic009G051201 Sobic003G149600--Sobic009G051201 Sobic007G127700 Sobic007G127700 Sobic003G149600--Sobic007G127700 Sobic007G209700 Sobic007G209700 Sobic003G149600--Sobic007G209700 Sobic002G234100 Sobic002G234100 Sobic003G149600--Sobic002G234100 Sobic003G378700 Sobic003G378700 Sobic003G149600--Sobic003G378700 Sobic010G020100 Sobic010G020100 Sobic003G149600--Sobic010G020100 Sobic002G101200 Sobic002G101200 Sobic003G149600--Sobic002G101200 Sobic007G054700 Sobic007G054700 Sobic003G149600--Sobic007G054700 Sobic002G217000 Sobic002G217000 Sobic003G149600--Sobic002G217000 Sobic003G213100 Sobic003G213100 Sobic009G051201--Sobic003G213100 Sobic003G225800 Sobic003G225800 Sobic009G051201--Sobic003G225800 Sobic009G051201--Sobic002G101200 Sobic009G051201--Sobic002G217000 Sobic005G197000 Sobic005G197000 Sobic009G051201--Sobic005G197000 Sobic002G069800 Sobic002G069800 Sobic009G051201--Sobic002G069800 Sobic005G003100 Sobic005G003100 Sobic009G051201--Sobic005G003100 Sobic009G051201--Sobic007G209700 Sobic009G013200 Sobic009G013200 Sobic009G051201--Sobic009G013200 Sobic007G069800 Sobic007G069800 Sobic007G127700--Sobic007G069800 Sobic007G127700--Sobic009G051201 Sobic005G052100 Sobic005G052100 Sobic007G127700--Sobic005G052100 Sobic007G127700--Sobic002G069800 Sobic007G127700--Sobic003G213100 Sobic001G112350 Sobic001G112350 Sobic007G127700--Sobic001G112350 Sobic007G127700--Sobic009G013200 Sobic007G127700--Sobic005G003100 Sobic001G330600 Sobic001G330600 Sobic007G127700--Sobic001G330600 Sobic003G307600 Sobic003G307600 Sobic007G209700--Sobic003G307600 Sobic007G209700--Sobic002G234100 Sobic007G209700--Sobic009G051201 Sobic007G123000 Sobic007G123000 Sobic007G209700--Sobic007G123000 Sobic010G181900 Sobic010G181900 Sobic007G209700--Sobic010G181900 Sobic007G209700--Sobic002G101200 Sobic007G209700--Sobic002G217000 Sobic001G297300 Sobic001G297300 Sobic007G209700--Sobic001G297300 Sobic005G089101 Sobic005G089101 Sobic007G209700--Sobic005G089101 Sobic002G234100--Sobic007G209700 Sobic002G234100--Sobic009G051201 Sobic002G234100--Sobic003G378700 Sobic002G234100--Sobic003G307600 Sobic002G234100--Sobic003G213100 Sobic002G234100--Sobic003G225800 Sobic002G234100--Sobic002G217000 Sobic002G234100--Sobic005G197000 Sobic002G234100--Sobic002G101200 Sobic002G058900 Sobic002G058900 Sobic003G378700--Sobic002G058900 Sobic003G378700--Sobic002G217000 Sobic003G378700--Sobic002G234100 Sobic003G378700--Sobic007G209700 Sobic003G378700--Sobic002G101200 Sobic007G037200 Sobic007G037200 Sobic003G378700--Sobic007G037200 Sobic006G004100 Sobic006G004100 Sobic003G378700--Sobic006G004100 Sobic008G159300 Sobic008G159300 Sobic003G378700--Sobic008G159300 Sobic004G220900 Sobic004G220900 Sobic003G378700--Sobic004G220900 Sobic001G401975 Sobic001G401975 Sobic010G020100--Sobic001G401975 Sobic002G172100 Sobic002G172100 Sobic010G020100--Sobic002G172100 Sobic003G266100 Sobic003G266100 Sobic010G020100--Sobic003G266100 Sobic002G172200 Sobic002G172200 Sobic010G020100--Sobic002G172200 Sobic003G294800 Sobic003G294800 Sobic010G020100--Sobic003G294800 Sobic001G284700 Sobic001G284700 Sobic010G020100--Sobic001G284700 Sobic010G020100--Sobic004G220900 Sobic001G261700 Sobic001G261700 Sobic010G020100--Sobic001G261700 Sobic003G106400 Sobic003G106400 Sobic010G020100--Sobic003G106400 Sobic002G101200--Sobic002G217000 Sobic005G032500 Sobic005G032500 Sobic002G101200--Sobic005G032500 Sobic002G101200--Sobic002G058900 Sobic002G101200--Sobic007G037200 Sobic002G166800 Sobic002G166800 Sobic002G101200--Sobic002G166800 Sobic002G100000 Sobic002G100000 Sobic002G101200--Sobic002G100000 Sobic002G101200--Sobic003G225800 Sobic006G031000 Sobic006G031000 Sobic002G101200--Sobic006G031000 Sobic002G101200--Sobic009G051201 Sobic007G054700--Sobic003G225800 Sobic007G054700--Sobic005G089101 Sobic007G054700--Sobic005G197000 Sobic007G054700--Sobic003G213100 Sobic007G054700--Sobic002G217000 Sobic003G291100 Sobic003G291100 Sobic007G054700--Sobic003G291100 Sobic005G001500 Sobic005G001500 Sobic007G054700--Sobic005G001500 Sobic007G054700--Sobic002G100000 Sobic007G122932 Sobic007G122932 Sobic007G054700--Sobic007G122932 Sobic002G217000--Sobic003G225800 Sobic002G217000--Sobic002G101200 Sobic002G217000--Sobic005G197000 Sobic002G217000--Sobic002G058900 Sobic002G217000--Sobic007G037200 Sobic002G217000--Sobic005G089101 Sobic002G217000--Sobic005G032500 Sobic002G217000--Sobic002G100000 Sobic002G217000--Sobic006G004100
Octagon: transcription factors


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