Gene annotation
Transcriptome id Sobic.003G241050.1
Synonym -
Functional annotation -
UniProt A0A1W0VYN8
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
2 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
3 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
4 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
5 Sobic.003G105800 No apical meristem protein, putative, expressed -
6 Sobic.003G087200 nuclease PA3, putative, expressed -
7 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
8 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
9 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
10 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
11 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
12 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
13 Sobic.006G100332 - -
14 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
15 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
16 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
17 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
18 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
19 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
20 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1


Gene co-expression network
sample Sobic003G241050 Sobic003G241050 Sobic003G148800 Sobic003G148800 Sobic003G241050--Sobic003G148800 Sobic004G321800 Sobic004G321800 Sobic003G241050--Sobic004G321800 Sobic001G325200 Sobic001G325200 Sobic003G241050--Sobic001G325200 Sobic007G068100 Sobic007G068100 Sobic003G241050--Sobic007G068100 Sobic003G105800 Sobic003G105800 Sobic003G241050--Sobic003G105800 Sobic003G087200 Sobic003G087200 Sobic003G241050--Sobic003G087200 Sobic002G304000 Sobic002G304000 Sobic003G241050--Sobic002G304000 Sobic009G226300 Sobic009G226300 Sobic003G241050--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic003G241050--Sobic009G054500 Sobic003G148800--Sobic009G226300 Sobic003G148800--Sobic009G054500 Sobic003G148800--Sobic001G325200 Sobic003G148800--Sobic004G321800 Sobic003G148800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic003G148800--Sobic005G018500 Sobic001G150600 Sobic001G150600 Sobic003G148800--Sobic001G150600 Sobic006G100332 Sobic006G100332 Sobic003G148800--Sobic006G100332 Sobic006G030700 Sobic006G030700 Sobic003G148800--Sobic006G030700 Sobic004G321800--Sobic006G100332 Sobic004G321800--Sobic003G087200 Sobic004G321800--Sobic003G148800 Sobic004G321800--Sobic009G226300 Sobic004G321800--Sobic001G325200 Sobic004G321800--Sobic003G105800 Sobic003G184900 Sobic003G184900 Sobic004G321800--Sobic003G184900 Sobic004G321800--Sobic001G150600 Sobic004G320600 Sobic004G320600 Sobic004G321800--Sobic004G320600 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic001G325200--Sobic004G321800 Sobic004G101900 Sobic004G101900 Sobic001G325200--Sobic004G101900 Sobic001G325200--Sobic002G304000 Sobic001G325200--Sobic009G054500 Sobic001G015500 Sobic001G015500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic007G068100--Sobic001G325200 Sobic001G474500 Sobic001G474500 Sobic007G068100--Sobic001G474500 Sobic003G388251 Sobic003G388251 Sobic007G068100--Sobic003G388251 Sobic007G068100--Sobic003G148800 Sobic009G057300 Sobic009G057300 Sobic007G068100--Sobic009G057300 Sobic007G068100--Sobic004G101900 Sobic003G428400 Sobic003G428400 Sobic007G068100--Sobic003G428400 Sobic007G068100--Sobic009G226300 Sobic007G068100--Sobic004G321800 Sobic003G105800--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic003G105800--Sobic008G079300 Sobic003G105800--Sobic004G321800 Sobic003G105800--Sobic001G325200 Sobic003G105800--Sobic002G304000 Sobic007G225900 Sobic007G225900 Sobic003G105800--Sobic007G225900 Sobic003G105800--Sobic006G100332 Sobic003G105800--Sobic003G087200 Sobic003G105800--Sobic009G226300 Sobic003G087200--Sobic001G150600 Sobic003G087200--Sobic006G100332 Sobic003G087200--Sobic004G321800 Sobic003G087200--Sobic006G030700 Sobic003G087200--Sobic009G226300 Sobic006G091700 Sobic006G091700 Sobic003G087200--Sobic006G091700 Sobic003G087200--Sobic003G148800 Sobic008G153400 Sobic008G153400 Sobic003G087200--Sobic008G153400 Sobic009G114000 Sobic009G114000 Sobic003G087200--Sobic009G114000 Sobic002G304000--Sobic009G226300 Sobic002G304000--Sobic009G054500 Sobic002G304000--Sobic004G101900 Sobic002G304000--Sobic003G148800 Sobic002G215700 Sobic002G215700 Sobic002G304000--Sobic002G215700 Sobic008G062200 Sobic008G062200 Sobic002G304000--Sobic008G062200 Sobic002G304000--Sobic001G325200 Sobic002G304000--Sobic003G355600 Sobic002G304000--Sobic003G105800 Sobic009G226300--Sobic009G054500 Sobic001G249300 Sobic001G249300 Sobic009G226300--Sobic001G249300 Sobic007G187300 Sobic007G187300 Sobic009G226300--Sobic007G187300 Sobic009G226300--Sobic006G030700 Sobic009G226300--Sobic003G148800 Sobic009G226300--Sobic006G100332 Sobic009G226300--Sobic001G325200 Sobic009G226300--Sobic002G304000 Sobic004G260000 Sobic004G260000 Sobic009G226300--Sobic004G260000 Sobic009G054500--Sobic009G226300 Sobic009G054500--Sobic005G018500 Sobic009G054500--Sobic001G249300 Sobic009G054500--Sobic004G260000 Sobic009G054500--Sobic003G148800 Sobic003G259200 Sobic003G259200 Sobic009G054500--Sobic003G259200 Sobic009G054500--Sobic007G187300 Sobic009G054500--Sobic006G100332 Sobic009G054500--Sobic002G215700
Octagon: transcription factors


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