Gene annotation
Transcriptome id Sobic.003G253200.1
Synonym SbDof13, CDF3, DNA binding with One Finger, Sb03g030850
Functional annotation Homologous to Dof genes in Arabidopsis and rice. (PubMedID : 21161392)
dof zinc finger domain containing protein, putative, expressed
UniProt A0A1W0VYW0 , E6PBM0
Pfam PF02701
Panther DB PTHR31089 PTHR31089:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G47500 : cycling DOF factor 3
RAP-DB (Rice) LOC_Os01g48290.1 : dof zinc finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a037944 , Zm00025a006998 , Zm00025a028085 , Zm00025a040004 , Zm00025a038795 , Zm00025a017812 , Zm00025a027510 , Zm00025a044220
Brachypodium KQK07701 , KQK14158 , KQK11789 , KQK09823 , KQJ96615
Barley HORVU1Hr1G076800.1 , HORVU1Hr1G005390.4 , HORVU1Hr1G005390.1 , HORVU1Hr1G005390.2 , HORVU4Hr1G013890.1 , HORVU3Hr1G116220.1 , HORVU3Hr1G072970.1 , HORVU3Hr1G061840.2 , HORVU3Hr1G061840.3 , HORVU3Hr1G116220.2
Wheat TraesCS1B02G045000 , TraesCS1B02G045000 , TraesCS1B02G045000 , TraesCS1D02G036700 , TraesCS1D02G036700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G319200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.002G214500 major ampullate spidroin 2, putative, expressed -
3 Sobic.006G274500 plant-specific domain TIGR01627 family protein, expressed -
4 Sobic.010G275001 - -
5 Sobic.001G331000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.004G333300 serine-rich protein, putative, expressed -
7 Sobic.001G156600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed -
8 Sobic.003G125500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@TKL_IRAK_CR4L.2 - The CR4L subfamily has homology with Crinkly4, expressed -
9 Sobic.009G115600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G040400 EF hand family protein, putative, expressed -
11 Sobic.004G174000 expressed protein -
12 Sobic.005G226100 ZOS11-10 - C2H2 zinc finger protein, expressed -
13 Sobic.003G428900 C2 domain containing protein, putative, expressed -
14 Sobic.007G158500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@patatin, putative, expressed -
15 Sobic.009G121600 cytochrome P450 86A2, putative, expressed -
16 Sobic.010G099000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
17 Sobic.001G330925 - -
18 Sobic.003G037100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.004G167300 OsFBX51 - F-box domain containing protein, expressed -
20 Sobic.009G216050 - -


Gene co-expression network
sample Sobic003G253200 Sobic003G253200 Sobic001G319200 Sobic001G319200 Sobic003G253200--Sobic001G319200 Sobic002G214500 Sobic002G214500 Sobic003G253200--Sobic002G214500 Sobic006G274500 Sobic006G274500 Sobic003G253200--Sobic006G274500 Sobic010G275001 Sobic010G275001 Sobic003G253200--Sobic010G275001 Sobic001G331000 Sobic001G331000 Sobic003G253200--Sobic001G331000 Sobic004G333300 Sobic004G333300 Sobic003G253200--Sobic004G333300 Sobic001G156600 Sobic001G156600 Sobic003G253200--Sobic001G156600 Sobic003G125500 Sobic003G125500 Sobic003G253200--Sobic003G125500 Sobic009G115600 Sobic009G115600 Sobic003G253200--Sobic009G115600 Sobic004G195000 Sobic004G195000 Sobic001G319200--Sobic004G195000 Sobic005G080200 Sobic005G080200 Sobic001G319200--Sobic005G080200 Sobic006G246100 Sobic006G246100 Sobic001G319200--Sobic006G246100 Sobic006G113000 Sobic006G113000 Sobic001G319200--Sobic006G113000 Sobic002G067300 Sobic002G067300 Sobic001G319200--Sobic002G067300 Sobic001G432700 Sobic001G432700 Sobic001G319200--Sobic001G432700 Sobic010G194300 Sobic010G194300 Sobic001G319200--Sobic010G194300 Sobic010G192900 Sobic010G192900 Sobic001G319200--Sobic010G192900 Sobic003G360200 Sobic003G360200 Sobic001G319200--Sobic003G360200 Sobic010G018300 Sobic010G018300 Sobic002G214500--Sobic010G018300 Sobic005G226100 Sobic005G226100 Sobic002G214500--Sobic005G226100 Sobic010G131600 Sobic010G131600 Sobic002G214500--Sobic010G131600 Sobic003G037100 Sobic003G037100 Sobic002G214500--Sobic003G037100 Sobic009G121600 Sobic009G121600 Sobic002G214500--Sobic009G121600 Sobic001G330925 Sobic001G330925 Sobic002G214500--Sobic001G330925 Sobic009G067400 Sobic009G067400 Sobic002G214500--Sobic009G067400 Sobic008G070900 Sobic008G070900 Sobic002G214500--Sobic008G070900 Sobic001G146500 Sobic001G146500 Sobic002G214500--Sobic001G146500 Sobic008G081400 Sobic008G081400 Sobic006G274500--Sobic008G081400 Sobic009G181300 Sobic009G181300 Sobic006G274500--Sobic009G181300 Sobic003G385500 Sobic003G385500 Sobic006G274500--Sobic003G385500 Sobic006G274500--Sobic003G253200 Sobic004G209500 Sobic004G209500 Sobic006G274500--Sobic004G209500 Sobic003G003000 Sobic003G003000 Sobic006G274500--Sobic003G003000 Sobic006G274500--Sobic001G331000 Sobic003G016400 Sobic003G016400 Sobic006G274500--Sobic003G016400 Sobic008G008300 Sobic008G008300 Sobic006G274500--Sobic008G008300 Sobic002G269032 Sobic002G269032 Sobic010G275001--Sobic002G269032 Sobic010G275001--Sobic010G018300 Sobic001G381300 Sobic001G381300 Sobic010G275001--Sobic001G381300 Sobic010G275001--Sobic003G037100 Sobic010G275001--Sobic005G226100 Sobic010G275001--Sobic009G067400 Sobic001G146400 Sobic001G146400 Sobic010G275001--Sobic001G146400 Sobic010G275001--Sobic001G146500 Sobic002G202800 Sobic002G202800 Sobic010G275001--Sobic002G202800 Sobic006G228200 Sobic006G228200 Sobic001G331000--Sobic006G228200 Sobic007G158500 Sobic007G158500 Sobic001G331000--Sobic007G158500 Sobic001G331000--Sobic002G067300 Sobic006G031200 Sobic006G031200 Sobic001G331000--Sobic006G031200 Sobic006G021900 Sobic006G021900 Sobic001G331000--Sobic006G021900 Sobic001G331000--Sobic002G214500 Sobic003G428900 Sobic003G428900 Sobic001G331000--Sobic003G428900 Sobic004G167300 Sobic004G167300 Sobic001G331000--Sobic004G167300 Sobic001G331000--Sobic006G274500 Sobic001G345400 Sobic001G345400 Sobic004G333300--Sobic001G345400 Sobic009G216050 Sobic009G216050 Sobic004G333300--Sobic009G216050 Sobic004G333300--Sobic004G209500 Sobic008G038100 Sobic008G038100 Sobic004G333300--Sobic008G038100 Sobic004G174000 Sobic004G174000 Sobic004G333300--Sobic004G174000 Sobic003G310500 Sobic003G310500 Sobic004G333300--Sobic003G310500 Sobic004G110400 Sobic004G110400 Sobic004G333300--Sobic004G110400 Sobic001G314800 Sobic001G314800 Sobic004G333300--Sobic001G314800 Sobic004G101000 Sobic004G101000 Sobic004G333300--Sobic004G101000 Sobic001G156600--Sobic003G253200 Sobic007G059000 Sobic007G059000 Sobic001G156600--Sobic007G059000 Sobic001G156600--Sobic007G158500 Sobic001G251650 Sobic001G251650 Sobic001G156600--Sobic001G251650 Sobic001G156600--Sobic006G274500 Sobic001G156600--Sobic001G330925 Sobic001G156600--Sobic001G331000 Sobic003G138100 Sobic003G138100 Sobic001G156600--Sobic003G138100 Sobic001G156600--Sobic002G214500 Sobic010G267100 Sobic010G267100 Sobic003G125500--Sobic010G267100 Sobic010G122400 Sobic010G122400 Sobic003G125500--Sobic010G122400 Sobic004G251100 Sobic004G251100 Sobic003G125500--Sobic004G251100 Sobic003G125500--Sobic003G253200 Sobic003G024900 Sobic003G024900 Sobic003G125500--Sobic003G024900 Sobic002G024000 Sobic002G024000 Sobic003G125500--Sobic002G024000 Sobic006G058400 Sobic006G058400 Sobic003G125500--Sobic006G058400 Sobic010G099000 Sobic010G099000 Sobic003G125500--Sobic010G099000 Sobic003G125500--Sobic001G319200 Sobic009G173800 Sobic009G173800 Sobic009G115600--Sobic009G173800 Sobic009G115500 Sobic009G115500 Sobic009G115600--Sobic009G115500 Sobic009G115600--Sobic001G330925 Sobic003G325100 Sobic003G325100 Sobic009G115600--Sobic003G325100 Sobic001G321700 Sobic001G321700 Sobic009G115600--Sobic001G321700 Sobic009G115600--Sobic003G253200 Sobic009G115600--Sobic002G202800 Sobic010G160033 Sobic010G160033 Sobic009G115600--Sobic010G160033 Sobic009G115600--Sobic003G310500
Octagon: transcription factors


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