Gene annotation
| Transcriptome id | Sobic.003G303400.1 |
|---|---|
| Synonym | SnRK3.9, Sb03g035225, ATWL4, WL4, CIPK12 |
| Functional annotation | CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| UniProt | A0A1B6Q683 |
| Pfam | - |
| Panther DB | PTHR24347 PTHR24347:SF168 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G18700 : CBL-interacting protein kinase 12 |
|---|---|
| RAP-DB (Rice) | LOC_Os05g43840.1 : CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| MaizeGDB (Corn) | Zm00025a027493 , Zm00025a039983 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G100832 | - | - |
| 2 | Sobic.006G057500 | flavonol sulfotransferase, putative, expressed | - |
| 3 | Sobic.002G102132 | - | - |
| 4 | Sobic.004G263100 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 5 | Sobic.007G159100 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@tetraspanin family protein, putative, expressed | - |
| 6 | Sobic.004G165800 | zinc finger family protein, putative, expressed | - |
| 7 | Sobic.010G179400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed | K08237: hydroquinone glucosyltransferase |
| 8 | Sobic.002G238600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- | - |
| 9 | Sobic.001G102150 | - | - |
| 10 | Sobic.007G169500 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@Ribosomal protein L1p/L10e family("PubMedID : 26759170,PubMedID : 24597475")@L1P family of ribosomal proteins domain containing protein, expressed | K02865: RP-L10Ae, large subunit ribosomal protein L10Ae |
| 11 | Sobic.004G341000 | OsFBX66 - F-box domain containing protein, expressed | - |
| 12 | Sobic.004G083401 | - | - |
| 13 | Sobic.001G065900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 14 | Sobic.006G104700 | aldose 1-epimerase, putative, expressed | K01785: galM, aldose 1-epimerase |
| 15 | Sobic.009G257400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@vacuolar-processing enzyme precursor, putative, expressed | K01369: legumain |
| 16 | Sobic.001G327500 | uridine 5-monophosphate synthase, putative, expressed | K13421: uridine monophosphate synthetase |
| 17 | Sobic.008G054150 | - | - |
| 18 | Sobic.002G099451 | - | - |
| 19 | Sobic.002G390000 | dirigent, putative, expressed | - |
| 20 | Sobic.006G091800 | 12-oxophytodienoate reductase, putative, expressed | K05894: 12-oxophytodienoic acid reductase |
Gene co-expression network
Octagon: transcription factors
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