Gene annotation
| Transcriptome id | Sobic.009G257400.1 |
|---|---|
| Synonym | GAMMAVPE, GAMMA-VPE, Sb09g030710 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543) vacuolar-processing enzyme precursor, putative, expressed |
| UniProt | A0A1B6PAB3 |
| Pfam | PF01650 |
| Panther DB | PTHR12000 PTHR12000:SF19 |
| NCBI CDD | - |
| KEGG Orthology | K01369; legumain |
| Gene Ontology | GO:0008233; peptidase activity GO:0006508proteolysis |
Orthologs (automatic annotation)
| TAIR | AT2G25940 : alpha-vacuolar processing enzyme |
|---|---|
| RAP-DB (Rice) | LOC_Os01g37910.1 : vacuolar-processing enzyme precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a036813 |
| Brachypodium | KQK08339 , KQJ90210 |
| Barley | HORVU5Hr1G066250.6 , HORVU5Hr1G066250.7 , HORVU5Hr1G066250.4 , HORVU5Hr1G066250.5 , HORVU5Hr1G066250.2 , HORVU5Hr1G066250.3 , HORVU5Hr1G066250.1 , HORVU5Hr1G066250.8 , HORVU3Hr1G048520.2 , HORVU3Hr1G048520.3 , HORVU3Hr1G048520.1 , HORVU3Hr1G048520.6 , HORVU3Hr1G048520.7 , HORVU3Hr1G048520.4 , HORVU3Hr1G048520.5 , HORVU3Hr1G048520.8 |
| Wheat | TraesCS5A02G228900 , TraesCS3D02G207600 , TraesCS5B02G227600 , TraesCS3A02G204500 , TraesCS3B02G233000 , TraesCS5D02G238800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G104700 | aldose 1-epimerase, putative, expressed | K01785: galM, aldose 1-epimerase |
| 2 | Sobic.004G341000 | OsFBX66 - F-box domain containing protein, expressed | - |
| 3 | Sobic.001G065900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 4 | Sobic.002G238600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- | - |
| 5 | Sobic.003G060100 | expressed protein | - |
| 6 | Sobic.002G100832 | - | - |
| 7 | Sobic.006G057500 | flavonol sulfotransferase, putative, expressed | - |
| 8 | Sobic.009G183900 | ICE-like protease p20 domain containing protein, putative, expressed | - |
| 9 | Sobic.010G063033 | - | - |
| 10 | Sobic.004G263100 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 11 | Sobic.001G256800 | dirigent, putative, expressed | - |
| 12 | Sobic.004G228500 | plastocyanin-like domain containing protein, putative, expressed | - |
| 13 | Sobic.004G092800 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 14 | Sobic.009G194400 | expressed protein | - |
| 15 | Sobic.003G370600 | hydrolase, alpha/beta fold family domain containing protein, expressed | K07019: uncharacterized protein |
| 16 | Sobic.002G390000 | dirigent, putative, expressed | - |
| 17 | Sobic.002G234400 | white-brown complex homolog protein 11, putative, expressed | - |
| 18 | Sobic.004G229500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed | - |
| 19 | Sobic.003G303400 | CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 20 | Sobic.004G251800 | leaf senescence related protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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