Gene annotation
Transcriptome id Sobic.003G423900.1
Synonym SCL-3, SCL3, Sb03g045660
Functional annotation GRAS family transcription factor containing protein (PubMedID : 24906815)
GRAS family transcription factor containing protein, expressed
UniProt C5XHT9
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0000989obsolete transcription factor activity, transcription factor binding


Orthologs (automatic annotation)
TAIR AT1G50420 : scarecrow-like 3
RAP-DB (Rice) LOC_Os01g71970.1 : GRAS family transcription factor containing protein, expressed
MaizeGDB (Corn) Zm00025a026034 , Zm00025a039148
Brachypodium KQK11541 , PNT73600
Barley HORVU3Hr1G106260.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G423900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
2 Sobic.001G286000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
3 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
4 Sobic.007G217300 hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
5 Sobic.010G220400 -(PubMedID : 23108465)@OsFBX202 - F-box domain containing protein, expressed -
6 Sobic.003G078501 - -
7 Sobic.004G155150 - -
8 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
9 Sobic.001G159850 - -
10 Sobic.001G159850 - -
11 Sobic.001G159850 - -
12 Sobic.001G159850 - -
13 Sobic.001G159850 - -
14 Sobic.001G159850 - -
15 Sobic.001G159850 - -
16 Sobic.001G159850 - -
17 Sobic.001G159850 - -
18 Sobic.001G159850 - -
19 Sobic.001G159850 - -
20 Sobic.001G159850 - -


Gene co-expression network
sample Sobic003G423900 Sobic003G423900 Sobic009G000700 Sobic009G000700 Sobic003G423900--Sobic009G000700 Sobic001G286000 Sobic001G286000 Sobic003G423900--Sobic001G286000 Sobic004G310600 Sobic004G310600 Sobic003G423900--Sobic004G310600 Sobic007G217300 Sobic007G217300 Sobic003G423900--Sobic007G217300 Sobic010G220400 Sobic010G220400 Sobic003G423900--Sobic010G220400 Sobic003G078501 Sobic003G078501 Sobic003G423900--Sobic003G078501 Sobic004G155150 Sobic004G155150 Sobic003G423900--Sobic004G155150 Sobic001G125100 Sobic001G125100 Sobic003G423900--Sobic001G125100 Sobic001G159850 Sobic001G159850 Sobic003G423900--Sobic001G159850 Sobic009G000700--Sobic004G310600 Sobic009G000700--Sobic003G078501 Sobic009G000700--Sobic004G155150 Sobic010G006700 Sobic010G006700 Sobic009G000700--Sobic010G006700 Sobic004G331300 Sobic004G331300 Sobic009G000700--Sobic004G331300 Sobic003G233900 Sobic003G233900 Sobic009G000700--Sobic003G233900 Sobic003G373150 Sobic003G373150 Sobic009G000700--Sobic003G373150 Sobic006G267900 Sobic006G267900 Sobic009G000700--Sobic006G267900 Sobic009G000700--Sobic001G125100 Sobic001G286000--Sobic009G000700 Sobic001G286000--Sobic004G310600 Sobic001G286000--Sobic004G155150 Sobic007G051600 Sobic007G051600 Sobic001G286000--Sobic007G051600 Sobic009G201500 Sobic009G201500 Sobic001G286000--Sobic009G201500 Sobic001G286000--Sobic006G267900 Sobic001G286000--Sobic001G125100 Sobic001G286000--Sobic003G078501 Sobic001G286000--Sobic010G220400 Sobic004G310600--Sobic009G000700 Sobic004G310600--Sobic003G078501 Sobic004G310600--Sobic010G006700 Sobic004G310600--Sobic003G373150 Sobic004G310600--Sobic004G155150 Sobic004G310600--Sobic004G331300 Sobic004G310600--Sobic003G233900 Sobic004G257350 Sobic004G257350 Sobic004G310600--Sobic004G257350 Sobic004G310600--Sobic006G267900 Sobic007G217300--Sobic001G125100 Sobic007G217300--Sobic003G078501 Sobic007G217300--Sobic010G006700 Sobic007G217300--Sobic001G159850 Sobic010G220400--Sobic009G000700 Sobic010G220400--Sobic001G159850 Sobic003G078501--Sobic004G310600 Sobic003G078501--Sobic009G000700 Sobic003G078501--Sobic010G006700 Sobic003G078501--Sobic001G125100 Sobic003G078501--Sobic001G159850 Sobic004G155150--Sobic009G000700 Sobic004G155150--Sobic004G310600 Sobic004G155150--Sobic003G078501 Sobic004G155150--Sobic003G233900 Sobic004G155150--Sobic006G267900 Sobic004G155150--Sobic010G006700 Sobic004G155150--Sobic004G257350 Sobic004G155150--Sobic003G373150 Sobic004G155150--Sobic001G125100 Sobic001G125100--Sobic003G078501 Sobic001G125100--Sobic010G006700 Sobic001G125100--Sobic003G373150 Sobic001G125100--Sobic001G159850 Sobic001G159850--Sobic001G159850
Octagon: transcription factors


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