Gene annotation
Transcriptome id Sobic.003G429800.1
Synonym Sb03g046170, LRP1
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
LRP1, putative, expressed
UniProt A0A1B6Q8B3
Pfam PF05142
Panther DB PTHR31604 PTHR31604:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G12330 : Lateral root primordium (LRP) protein-related
RAP-DB (Rice) LOC_Os01g72490.2 : LRP1, putative, expressed
MaizeGDB (Corn) Zm00025a047778 , Zm00025a041742 , Zm00025a039107 , Zm00025a018462
Brachypodium KQK11604 , PNT73613
Barley HORVU7Hr1G057230.2 , HORVU7Hr1G057230.3 , HORVU7Hr1G057230.1 , HORVU3Hr1G108950.10 , HORVU3Hr1G108950.11 , HORVU3Hr1G108950.4 , HORVU3Hr1G108950.5 , HORVU3Hr1G108950.6 , HORVU3Hr1G108950.7 , HORVU3Hr1G108950.1 , HORVU3Hr1G108950.2 , HORVU3Hr1G108950.3
Wheat TraesCS3D02G497300 , TraesCS3B02G552400 , TraesCS7B02G169200 , TraesCS3A02G491500 , TraesCS7A02G270900 , TraesCS7D02G271400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
2 Sobic.003G010600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
3 Sobic.007G187300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G138200 expressed protein -
5 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
6 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
7 Sobic.006G100332 - -
8 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
9 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
11 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
12 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
13 Sobic.006G030700 receptor kinase, putative, expressed -
14 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
15 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
16 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
17 Sobic.002G215800 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
18 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
19 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
20 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G429800 Sobic003G429800 Sobic009G211400 Sobic009G211400 Sobic003G429800--Sobic009G211400 Sobic003G010600 Sobic003G010600 Sobic003G429800--Sobic003G010600 Sobic007G187300 Sobic007G187300 Sobic003G429800--Sobic007G187300 Sobic003G138200 Sobic003G138200 Sobic003G429800--Sobic003G138200 Sobic005G151700 Sobic005G151700 Sobic003G429800--Sobic005G151700 Sobic007G068100 Sobic007G068100 Sobic003G429800--Sobic007G068100 Sobic006G100332 Sobic006G100332 Sobic003G429800--Sobic006G100332 Sobic009G029600 Sobic009G029600 Sobic003G429800--Sobic009G029600 Sobic009G226300 Sobic009G226300 Sobic003G429800--Sobic009G226300 Sobic003G219600 Sobic003G219600 Sobic009G211400--Sobic003G219600 Sobic010G107000 Sobic010G107000 Sobic009G211400--Sobic010G107000 Sobic009G211400--Sobic009G029600 Sobic009G211400--Sobic003G138200 Sobic004G260000 Sobic004G260000 Sobic009G211400--Sobic004G260000 Sobic002G215800 Sobic002G215800 Sobic009G211400--Sobic002G215800 Sobic009G054500 Sobic009G054500 Sobic009G211400--Sobic009G054500 Sobic009G193700 Sobic009G193700 Sobic009G211400--Sobic009G193700 Sobic005G018500 Sobic005G018500 Sobic009G211400--Sobic005G018500 Sobic001G325200 Sobic001G325200 Sobic003G010600--Sobic001G325200 Sobic003G010600--Sobic009G226300 Sobic003G010600--Sobic004G260000 Sobic003G010600--Sobic009G054500 Sobic003G010600--Sobic009G211400 Sobic008G062200 Sobic008G062200 Sobic003G010600--Sobic008G062200 Sobic003G010600--Sobic006G100332 Sobic003G010600--Sobic005G018500 Sobic003G010600--Sobic003G219600 Sobic007G187300--Sobic009G226300 Sobic006G030700 Sobic006G030700 Sobic007G187300--Sobic006G030700 Sobic001G249300 Sobic001G249300 Sobic007G187300--Sobic001G249300 Sobic007G187300--Sobic009G054500 Sobic007G187300--Sobic003G138200 Sobic007G187300--Sobic006G100332 Sobic001G280200 Sobic001G280200 Sobic007G187300--Sobic001G280200 Sobic007G187300--Sobic005G018500 Sobic007G187300--Sobic004G260000 Sobic003G138200--Sobic001G249300 Sobic003G138200--Sobic009G226300 Sobic003G138200--Sobic007G187300 Sobic001G150200 Sobic001G150200 Sobic003G138200--Sobic001G150200 Sobic003G138200--Sobic009G054500 Sobic003G138200--Sobic009G211400 Sobic002G215700 Sobic002G215700 Sobic003G138200--Sobic002G215700 Sobic003G138200--Sobic004G260000 Sobic003G138200--Sobic001G325200 Sobic010G098100 Sobic010G098100 Sobic005G151700--Sobic010G098100 Sobic001G483500 Sobic001G483500 Sobic005G151700--Sobic001G483500 Sobic005G151700--Sobic007G187300 Sobic003G259200 Sobic003G259200 Sobic005G151700--Sobic003G259200 Sobic005G151700--Sobic003G219600 Sobic005G151700--Sobic009G211400 Sobic005G151700--Sobic001G249300 Sobic005G151700--Sobic005G018500 Sobic005G151700--Sobic009G029600 Sobic007G068100--Sobic001G325200 Sobic001G474500 Sobic001G474500 Sobic007G068100--Sobic001G474500 Sobic003G388251 Sobic003G388251 Sobic007G068100--Sobic003G388251 Sobic003G148800 Sobic003G148800 Sobic007G068100--Sobic003G148800 Sobic009G057300 Sobic009G057300 Sobic007G068100--Sobic009G057300 Sobic004G101900 Sobic004G101900 Sobic007G068100--Sobic004G101900 Sobic003G428400 Sobic003G428400 Sobic007G068100--Sobic003G428400 Sobic007G068100--Sobic009G226300 Sobic004G321800 Sobic004G321800 Sobic007G068100--Sobic004G321800 Sobic001G150600 Sobic001G150600 Sobic006G100332--Sobic001G150600 Sobic003G087200 Sobic003G087200 Sobic006G100332--Sobic003G087200 Sobic006G100332--Sobic009G226300 Sobic006G100332--Sobic009G054500 Sobic006G100332--Sobic004G321800 Sobic006G100332--Sobic007G187300 Sobic006G100332--Sobic006G030700 Sobic006G100332--Sobic001G249300 Sobic006G100332--Sobic003G148800 Sobic004G255000 Sobic004G255000 Sobic009G029600--Sobic004G255000 Sobic009G029600--Sobic001G280200 Sobic009G029600--Sobic003G219600 Sobic009G029600--Sobic001G249300 Sobic009G029600--Sobic009G211400 Sobic009G029600--Sobic006G030700 Sobic009G029600--Sobic009G054500 Sobic009G029600--Sobic002G215800 Sobic009G029600--Sobic009G226300 Sobic009G226300--Sobic009G054500 Sobic009G226300--Sobic001G249300 Sobic009G226300--Sobic007G187300 Sobic009G226300--Sobic006G030700 Sobic009G226300--Sobic003G148800 Sobic009G226300--Sobic006G100332 Sobic009G226300--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic009G226300--Sobic002G304000 Sobic009G226300--Sobic004G260000
Octagon: transcription factors


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