Gene annotation
Transcriptome id Sobic.003G439200.1
Synonym NRPE1, NRPD1B, ATNRPD1B, DMS5, Sb03g046922, DRD3
Functional annotation RNA polymerase IV largest subunit, putative, expressed
UniProt A0A1B6Q8E3
Pfam PF04997 PF11523 PF00623
Panther DB PTHR19376 PTHR19376:SF36
NCBI CDD KOG0260; RNA polymerase II, large subunit
KEGG Orthology K16251; DNA-directed RNA polymerase V subunit 1
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G40030 : nuclear RNA polymerase D1B
RAP-DB (Rice) LOC_Os01g73430.1 : RNA polymerase IV largest subunit, putative, expressed
MaizeGDB (Corn) Zm00025a022835 , Zm00025a022836
Brachypodium KQK11689
Barley HORVU3Hr1G112670.19 , HORVU3Hr1G112670.14 , HORVU3Hr1G112670.15 , HORVU3Hr1G112670.16 , HORVU3Hr1G112670.10 , HORVU3Hr1G112670.11 , HORVU3Hr1G112670.7 , HORVU3Hr1G112670.4 , HORVU3Hr1G112670.5 , HORVU3Hr1G112670.2 , HORVU3Hr1G112670.3 , HORVU3Hr1G112670.8 , HORVU3Hr1G112670.9 , HORVU7Hr1G032760.1
Wheat TraesCS3D02G522400 , TraesCS3A02G513100 , TraesCS5B02G420400 , TraesCS3B02G581800
Populus -


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cDNA sequences
Sobic.003G439200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G305250 - -
2 Sobic.008G013700 - -
3 Sobic.004G192001 - -
4 Sobic.004G260700 - -
5 Sobic.010G178700 transferase family protein, putative, expressed -
6 Sobic.006G201450 - -
7 Sobic.001G360300 NAC domain-containing protein 67, putative, expressed -
8 Sobic.009G192450 - -
9 Sobic.005G024300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsCML2 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
10 Sobic.001G124500 elongation of fatty acids protein 2, putative, expressed -
11 Sobic.007G099300 - -
12 Sobic.001G523932 - -
13 Sobic.004G200000 expressed protein -
14 Sobic.002G231400 - -
15 Sobic.003G253900 - -
16 Sobic.002G331200 - -
17 Sobic.001G214400 - -
18 Sobic.004G125600 - -
19 Sobic.002G331050 - -
20 Sobic.009G151500 cinnamoyl-CoA reductase-related, putative, expressed -


Gene co-expression network
sample Sobic003G439200 Sobic003G439200 Sobic003G305250 Sobic003G305250 Sobic003G439200--Sobic003G305250 Sobic008G013700 Sobic008G013700 Sobic003G439200--Sobic008G013700 Sobic004G192001 Sobic004G192001 Sobic003G439200--Sobic004G192001 Sobic004G260700 Sobic004G260700 Sobic003G439200--Sobic004G260700 Sobic010G178700 Sobic010G178700 Sobic003G439200--Sobic010G178700 Sobic006G201450 Sobic006G201450 Sobic003G439200--Sobic006G201450 Sobic001G360300 Sobic001G360300 Sobic003G439200--Sobic001G360300 Sobic009G192450 Sobic009G192450 Sobic003G439200--Sobic009G192450 Sobic005G024300 Sobic005G024300 Sobic003G439200--Sobic005G024300 Sobic003G241600 Sobic003G241600 Sobic003G305250--Sobic003G241600 Sobic003G305250--Sobic003G439200 Sobic002G231400 Sobic002G231400 Sobic003G305250--Sobic002G231400 Sobic007G094000 Sobic007G094000 Sobic003G305250--Sobic007G094000 Sobic003G429600 Sobic003G429600 Sobic003G305250--Sobic003G429600 Sobic003G305250--Sobic004G260700 Sobic003G305250--Sobic006G201450 Sobic010G150000 Sobic010G150000 Sobic003G305250--Sobic010G150000 Sobic001G311700 Sobic001G311700 Sobic003G305250--Sobic001G311700 Sobic001G124500 Sobic001G124500 Sobic008G013700--Sobic001G124500 Sobic004G019700 Sobic004G019700 Sobic008G013700--Sobic004G019700 Sobic008G013700--Sobic004G192001 Sobic004G125701 Sobic004G125701 Sobic008G013700--Sobic004G125701 Sobic007G099300 Sobic007G099300 Sobic008G013700--Sobic007G099300 Sobic004G125600 Sobic004G125600 Sobic008G013700--Sobic004G125600 Sobic008G013700--Sobic010G178700 Sobic004G224400 Sobic004G224400 Sobic008G013700--Sobic004G224400 Sobic009G038800 Sobic009G038800 Sobic008G013700--Sobic009G038800 Sobic004G192001--Sobic007G099300 Sobic004G192001--Sobic004G260700 Sobic004G192001--Sobic001G124500 Sobic004G192001--Sobic004G019700 Sobic004G192001--Sobic008G013700 Sobic004G192001--Sobic010G178700 Sobic010G111900 Sobic010G111900 Sobic004G192001--Sobic010G111900 Sobic004G192001--Sobic004G125600 Sobic004G192001--Sobic003G439200 Sobic004G260700--Sobic004G192001 Sobic004G260700--Sobic007G099300 Sobic004G260700--Sobic006G201450 Sobic007G016300 Sobic007G016300 Sobic004G260700--Sobic007G016300 Sobic004G260700--Sobic001G124500 Sobic004G260700--Sobic003G305250 Sobic004G260700--Sobic007G094000 Sobic001G283800 Sobic001G283800 Sobic004G260700--Sobic001G283800 Sobic004G260700--Sobic008G013700 Sobic010G178700--Sobic001G124500 Sobic010G178700--Sobic008G013700 Sobic010G178700--Sobic004G019700 Sobic010G178700--Sobic004G125600 Sobic010G178700--Sobic004G192001 Sobic010G178700--Sobic007G099300 Sobic001G520200 Sobic001G520200 Sobic010G178700--Sobic001G520200 Sobic010G178700--Sobic009G038800 Sobic010G178700--Sobic004G125701 Sobic006G201450--Sobic001G311700 Sobic003G336550 Sobic003G336550 Sobic006G201450--Sobic003G336550 Sobic006G201450--Sobic004G260700 Sobic006G201450--Sobic002G231400 Sobic006G201450--Sobic003G305250 Sobic006G045301 Sobic006G045301 Sobic006G201450--Sobic006G045301 Sobic004G200000 Sobic004G200000 Sobic006G201450--Sobic004G200000 Sobic005G083866 Sobic005G083866 Sobic006G201450--Sobic005G083866 Sobic006G021100 Sobic006G021100 Sobic006G201450--Sobic006G021100 Sobic002G072050 Sobic002G072050 Sobic001G360300--Sobic002G072050 Sobic004G160350 Sobic004G160350 Sobic001G360300--Sobic004G160350 Sobic001G360300--Sobic009G192450 Sobic002G025100 Sobic002G025100 Sobic001G360300--Sobic002G025100 Sobic001G360300--Sobic003G439200 Sobic003G313600 Sobic003G313600 Sobic001G360300--Sobic003G313600 Sobic004G208000 Sobic004G208000 Sobic001G360300--Sobic004G208000 Sobic002G331050 Sobic002G331050 Sobic001G360300--Sobic002G331050 Sobic001G360300--Sobic006G201450 Sobic009G192450--Sobic004G160350 Sobic003G368450 Sobic003G368450 Sobic009G192450--Sobic003G368450 Sobic009G192450--Sobic002G025100 Sobic004G117850 Sobic004G117850 Sobic009G192450--Sobic004G117850 Sobic009G192450--Sobic003G313600 Sobic009G192450--Sobic001G360300 Sobic009G192450--Sobic002G072050 Sobic004G084600 Sobic004G084600 Sobic009G192450--Sobic004G084600 Sobic007G113000 Sobic007G113000 Sobic009G192450--Sobic007G113000 Sobic005G024300--Sobic003G305250 Sobic009G255200 Sobic009G255200 Sobic005G024300--Sobic009G255200 Sobic005G024300--Sobic003G439200 Sobic005G024300--Sobic008G013700 Sobic002G008701 Sobic002G008701 Sobic005G024300--Sobic002G008701 Sobic005G024300--Sobic004G260700 Sobic007G203850 Sobic007G203850 Sobic005G024300--Sobic007G203850 Sobic005G024300--Sobic007G016300 Sobic003G015800 Sobic003G015800 Sobic005G024300--Sobic003G015800
Octagon: transcription factors


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