Gene annotation
| Transcriptome id | Sobic.003G441100.1 |
|---|---|
| Synonym | Sb03g047090 |
| Functional annotation | hydrolase, alpha/beta fold family protein, putative, expressed |
| UniProt | C5XJB2 |
| Pfam | PF00561 |
| Panther DB | PTHR10992 PTHR10992:SF819 |
| NCBI CDD | KOG1454; Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G74300 : alpha/beta-Hydrolases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g33590.1 : hydrolase, alpha/beta fold family protein, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G126400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed | - |
| 2 | Sobic.004G006966 | - | - |
| 3 | Sobic.004G006966 | - | - |
| 4 | Sobic.004G006966 | - | - |
| 5 | Sobic.004G006966 | - | - |
| 6 | Sobic.004G006966 | - | - |
| 7 | Sobic.001G483500 | DUF567 domain containing protein, putative, expressed | - |
| 8 | Sobic.001G251900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed | - |
| 9 | Sobic.006G100400 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 10 | Sobic.003G374150 | - | - |
| 11 | Sobic.003G269700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@SAM dependent carboxyl methyltransferase, putative, expressed | - |
| 12 | Sobic.005G136800 | only inducible by pathogen inoculation(PubMedID : 20529887)@"SbCHS2 encodes a typical CHS that synthesizes naringenin chalcone, which is necessary for the formation of different flavonoid metabolites."(PubMedID : 15821144)@chalcone synthase, putative, expressed | K00660: chalcone synthase |
| 13 | Sobic.005G151700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed | K16292: CEP, KDEL-tailed cysteine endopeptidase |
| 14 | Sobic.010G098100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed | K08235: xyloglucan:xyloglucosyl transferase |
| 15 | Sobic.001G101400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed | - |
| 16 | Sobic.009G061300 | - | - |
| 17 | Sobic.010G016800 | - | - |
| 18 | Sobic.002G182850 | - | - |
| 19 | Sobic.002G215800 | ctr copper transporter family protein, putative, expressed | K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1 |
| 20 | Sobic.008G006500 | zinc knuckle family protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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