Gene annotation
| Transcriptome id | Sobic.006G126400.1 |
|---|---|
| Synonym | Sb06g020650 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) exonuclease, putative, expressed |
| UniProt | C5YAX0 |
| Pfam | PF09588 |
| Panther DB | - |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G67660 : Restriction endonuclease, type II-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g13890.1 : exonuclease, putative, expressed |
| MaizeGDB (Corn) | Zm00025a010951 , Zm00025a056331 |
| Brachypodium | KQJ83238 |
| Barley | HORVU2Hr1G083970.1 , HORVU2Hr1G083970.3 , HORVU2Hr1G083970.2 , HORVU2Hr1G083970.5 , HORVU2Hr1G083970.4 , HORVU2Hr1G083970.7 , HORVU2Hr1G083970.6 , HORVU2Hr1G083970.9 , HORVU2Hr1G083970.8 , HORVU2Hr1G083970.15 , HORVU2Hr1G083970.14 , HORVU2Hr1G083970.17 , HORVU2Hr1G083970.16 , HORVU2Hr1G083970.11 , HORVU2Hr1G083970.10 , HORVU2Hr1G083970.13 , HORVU2Hr1G083970.12 , HORVU2Hr1G083970.19 , HORVU2Hr1G083970.18 , HORVU2Hr1G083970.20 , HORVU2Hr1G083970.21 , HORVU2Hr1G083970.22 , HORVU2Hr1G083970.23 , HORVU2Hr1G083970.24 , HORVU2Hr1G083970.25 , HORVU2Hr1G083970.26 , HORVU2Hr1G083970.27 |
| Wheat | TraesCS2B02G362900 , TraesCS2B02G362900 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G441100 | hydrolase, alpha/beta fold family protein, putative, expressed | - |
| 2 | Sobic.010G016800 | - | - |
| 3 | Sobic.001G251900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed | - |
| 4 | Sobic.004G006966 | - | - |
| 5 | Sobic.004G006966 | - | - |
| 6 | Sobic.004G006966 | - | - |
| 7 | Sobic.004G006966 | - | - |
| 8 | Sobic.004G006966 | - | - |
| 9 | Sobic.001G101400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed | - |
| 10 | Sobic.001G483500 | DUF567 domain containing protein, putative, expressed | - |
| 11 | Sobic.006G007800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@legume lectins beta domain containing protein, putative, expressed | - |
| 12 | Sobic.009G061300 | - | - |
| 13 | Sobic.003G374150 | - | - |
| 14 | Sobic.002G215800 | ctr copper transporter family protein, putative, expressed | K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1 |
| 15 | Sobic.003G269700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@SAM dependent carboxyl methyltransferase, putative, expressed | - |
| 16 | Sobic.005G136800 | only inducible by pathogen inoculation(PubMedID : 20529887)@"SbCHS2 encodes a typical CHS that synthesizes naringenin chalcone, which is necessary for the formation of different flavonoid metabolites."(PubMedID : 15821144)@chalcone synthase, putative, expressed | K00660: chalcone synthase |
| 17 | Sobic.007G003200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed | - |
| 18 | Sobic.008G006500 | zinc knuckle family protein, expressed | - |
| 19 | Sobic.005G151700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed | K16292: CEP, KDEL-tailed cysteine endopeptidase |
| 20 | Sobic.002G182850 | - | - |
Gene co-expression network
Octagon: transcription factors
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