Gene annotation
Transcriptome id Sobic.004G058500.1
Synonym Sb04g004910
Functional annotation cell cycle control protein, putative, expressed
UniProt C5XW62
Pfam PF03381
Panther DB PTHR10926 PTHR10926:SF30
NCBI CDD KOG2952; Cell cycle control protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G54320 : LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
RAP-DB (Rice) LOC_Os06g45430.1 : cell cycle control protein, putative, expressed
MaizeGDB (Corn) Zm00025a019110 , Zm00025a051741 , Zm00025a041970 , Zm00025a034782
Brachypodium KQJ93571
Barley HORVU0Hr1G022300.5 , HORVU0Hr1G022300.4 , HORVU0Hr1G022300.7 , HORVU0Hr1G022300.6 , HORVU0Hr1G022300.1 , HORVU0Hr1G022300.3 , HORVU0Hr1G022300.2 , HORVU5Hr1G020720.4 , HORVU5Hr1G020720.5 , HORVU5Hr1G020720.6 , HORVU5Hr1G020720.7 , HORVU5Hr1G020720.1 , HORVU5Hr1G020720.2 , HORVU5Hr1G020720.3 , HORVU5Hr1G020720.8 , HORVU5Hr1G020720.9 , HORVU5Hr1G020720.14 , HORVU5Hr1G020720.15 , HORVU5Hr1G020720.12 , HORVU5Hr1G020720.13 , HORVU5Hr1G020720.11 , HORVU6Hr1G031530.8 , HORVU6Hr1G031530.9 , HORVU6Hr1G031530.1 , HORVU6Hr1G031530.2 , HORVU6Hr1G031530.3
Wheat TraesCS6D02G145600 , TraesCS6D02G145600 , TraesCS7D02G469100 , TraesCS6A02G155600 , TraesCS6B02G183800 , TraesCS7B02G384400 , TraesCS7A02G482200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.009G155200 ZOS5-08 - C2H2 zinc finger protein, expressed -
3 Sobic.010G224200 MYB family transcription factor, putative, expressed -
4 Sobic.002G423300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
6 Sobic.003G192100 expressed protein -
7 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
8 Sobic.008G111100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transporter family protein, putative, expressed -
9 Sobic.004G307000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
10 Sobic.002G055600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.001G400700 pathogenesis-related Bet v I family protein, putative, expressed -
12 Sobic.003G019200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
13 Sobic.004G277000 purine permease, putative, expressed -
14 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
15 Sobic.003G227300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY11, expressed -
16 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
17 Sobic.004G058000 VQ domain containing protein, putative, expressed -
18 Sobic.010G149300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
19 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
20 Sobic.001G281400 expressed protein -


Gene co-expression network
sample Sobic004G058500 Sobic004G058500 Sobic009G177800 Sobic009G177800 Sobic004G058500--Sobic009G177800 Sobic009G155200 Sobic009G155200 Sobic004G058500--Sobic009G155200 Sobic010G224200 Sobic010G224200 Sobic004G058500--Sobic010G224200 Sobic002G423300 Sobic002G423300 Sobic004G058500--Sobic002G423300 Sobic004G050000 Sobic004G050000 Sobic004G058500--Sobic004G050000 Sobic003G192100 Sobic003G192100 Sobic004G058500--Sobic003G192100 Sobic002G183200 Sobic002G183200 Sobic004G058500--Sobic002G183200 Sobic008G111100 Sobic008G111100 Sobic004G058500--Sobic008G111100 Sobic004G307000 Sobic004G307000 Sobic004G058500--Sobic004G307000 Sobic009G177800--Sobic002G183200 Sobic009G177800--Sobic004G307000 Sobic009G177800--Sobic008G111100 Sobic001G119100 Sobic001G119100 Sobic009G177800--Sobic001G119100 Sobic002G195900 Sobic002G195900 Sobic009G177800--Sobic002G195900 Sobic001G119000 Sobic001G119000 Sobic009G177800--Sobic001G119000 Sobic006G173900 Sobic006G173900 Sobic009G177800--Sobic006G173900 Sobic004G167800 Sobic004G167800 Sobic009G177800--Sobic004G167800 Sobic007G171000 Sobic007G171000 Sobic009G177800--Sobic007G171000 Sobic009G155200--Sobic007G171000 Sobic009G155200--Sobic001G119000 Sobic001G054400 Sobic001G054400 Sobic009G155200--Sobic001G054400 Sobic002G359300 Sobic002G359300 Sobic009G155200--Sobic002G359300 Sobic009G155200--Sobic008G111100 Sobic009G155200--Sobic009G177800 Sobic005G103300 Sobic005G103300 Sobic009G155200--Sobic005G103300 Sobic009G036700 Sobic009G036700 Sobic009G155200--Sobic009G036700 Sobic001G040200 Sobic001G040200 Sobic009G155200--Sobic001G040200 Sobic003G019200 Sobic003G019200 Sobic010G224200--Sobic003G019200 Sobic002G249000 Sobic002G249000 Sobic010G224200--Sobic002G249000 Sobic010G224200--Sobic009G177800 Sobic004G058000 Sobic004G058000 Sobic010G224200--Sobic004G058000 Sobic010G224200--Sobic008G111100 Sobic010G224200--Sobic002G423300 Sobic010G224200--Sobic004G307000 Sobic010G224200--Sobic004G050000 Sobic010G107100 Sobic010G107100 Sobic010G224200--Sobic010G107100 Sobic003G334600 Sobic003G334600 Sobic002G423300--Sobic003G334600 Sobic003G369100 Sobic003G369100 Sobic002G423300--Sobic003G369100 Sobic008G136400 Sobic008G136400 Sobic002G423300--Sobic008G136400 Sobic002G055600 Sobic002G055600 Sobic002G423300--Sobic002G055600 Sobic009G234100 Sobic009G234100 Sobic002G423300--Sobic009G234100 Sobic002G333400 Sobic002G333400 Sobic002G423300--Sobic002G333400 Sobic004G208700 Sobic004G208700 Sobic002G423300--Sobic004G208700 Sobic004G237800 Sobic004G237800 Sobic002G423300--Sobic004G237800 Sobic003G345100 Sobic003G345100 Sobic002G423300--Sobic003G345100 Sobic009G043600 Sobic009G043600 Sobic004G050000--Sobic009G043600 Sobic001G066000 Sobic001G066000 Sobic004G050000--Sobic001G066000 Sobic004G049900 Sobic004G049900 Sobic004G050000--Sobic004G049900 Sobic004G277000 Sobic004G277000 Sobic004G050000--Sobic004G277000 Sobic002G267500 Sobic002G267500 Sobic004G050000--Sobic002G267500 Sobic006G121500 Sobic006G121500 Sobic004G050000--Sobic006G121500 Sobic002G090200 Sobic002G090200 Sobic004G050000--Sobic002G090200 Sobic004G050000--Sobic009G177800 Sobic006G108400 Sobic006G108400 Sobic004G050000--Sobic006G108400 Sobic005G018700 Sobic005G018700 Sobic003G192100--Sobic005G018700 Sobic004G101300 Sobic004G101300 Sobic003G192100--Sobic004G101300 Sobic003G037500 Sobic003G037500 Sobic003G192100--Sobic003G037500 Sobic007G155000 Sobic007G155000 Sobic003G192100--Sobic007G155000 Sobic002G245100 Sobic002G245100 Sobic003G192100--Sobic002G245100 Sobic001G231700 Sobic001G231700 Sobic003G192100--Sobic001G231700 Sobic001G050100 Sobic001G050100 Sobic003G192100--Sobic001G050100 Sobic001G367600 Sobic001G367600 Sobic003G192100--Sobic001G367600 Sobic004G340900 Sobic004G340900 Sobic003G192100--Sobic004G340900 Sobic003G286600 Sobic003G286600 Sobic002G183200--Sobic003G286600 Sobic005G091500 Sobic005G091500 Sobic002G183200--Sobic005G091500 Sobic004G189400 Sobic004G189400 Sobic002G183200--Sobic004G189400 Sobic001G025300 Sobic001G025300 Sobic002G183200--Sobic001G025300 Sobic002G183200--Sobic001G119100 Sobic010G176600 Sobic010G176600 Sobic002G183200--Sobic010G176600 Sobic006G099900 Sobic006G099900 Sobic002G183200--Sobic006G099900 Sobic001G317200 Sobic001G317200 Sobic002G183200--Sobic001G317200 Sobic010G084400 Sobic010G084400 Sobic002G183200--Sobic010G084400 Sobic008G111100--Sobic009G177800 Sobic003G429300 Sobic003G429300 Sobic008G111100--Sobic003G429300 Sobic008G111100--Sobic004G307000 Sobic008G111100--Sobic003G019200 Sobic008G111100--Sobic009G155200 Sobic008G111100--Sobic007G171000 Sobic008G111100--Sobic002G195900 Sobic008G111100--Sobic010G224200 Sobic008G111100--Sobic002G423300 Sobic004G307000--Sobic009G177800 Sobic003G322900 Sobic003G322900 Sobic004G307000--Sobic003G322900 Sobic007G137700 Sobic007G137700 Sobic004G307000--Sobic007G137700 Sobic004G307000--Sobic008G111100 Sobic004G307000--Sobic002G195900 Sobic004G307000--Sobic002G055600 Sobic004G307000--Sobic004G050000 Sobic004G307000--Sobic002G423300 Sobic002G117100 Sobic002G117100 Sobic004G307000--Sobic002G117100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.