Gene annotation
Transcriptome id Sobic.004G167500.1
Synonym Sb04g021890
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XU03
Pfam -
Panther DB PTHR33177 PTHR33177:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G11600 : -
RAP-DB (Rice) LOC_Os04g33860.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU2Hr1G073380.11 , HORVU2Hr1G073380.10 , HORVU2Hr1G073380.13 , HORVU2Hr1G073380.12 , HORVU2Hr1G073380.9 , HORVU2Hr1G073380.8 , HORVU2Hr1G073380.5 , HORVU2Hr1G073380.4 , HORVU2Hr1G073380.7 , HORVU2Hr1G073380.6 , HORVU2Hr1G073380.1 , HORVU2Hr1G073380.2
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G059500 verticillium wilt disease resistance protein, putative, expressed -
2 Sobic.002G215600 BRCA1 C Terminus domain containing protein, expressed -
3 Sobic.006G049000 - -
4 Sobic.010G187950 - -
5 Sobic.003G356500 "uncharacterized lipid transporters, up-regulated under drought stress, mapped into a QTL involved in pre-flowering drought tolerance (QSTG2_4)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.008G153300 RING-H2 finger protein ATL3J, putative, expressed K10663: E3 ubiquitin-protein ligase ATL4
7 Sobic.001G071500 - -
8 Sobic.003G438100 expressed protein -
9 Sobic.001G468900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@DUF623 domain containing protein, expressed -
10 Sobic.001G442750 - -
11 Sobic.004G045000 phytosulfokine receptor precursor, putative, expressed -
12 Sobic.004G089801 - -
13 Sobic.001G421450 - -
14 Sobic.003G149700 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
15 Sobic.002G132201 - -
16 Sobic.001G273950 - -
17 Sobic.002G054800 "O2(Ortholog in maize:Hartings et al., 1989)"(PubMedID : 31659852)@bZIP transcription factor domain containing protein, expressed -
18 Sobic.007G224700 expressed protein -
19 Sobic.005G073300 limonoid UDP-glucosyltransferase, putative, expressed -
20 Sobic.001G084133 - -


Gene co-expression network
sample Sobic004G167500 Sobic004G167500 Sobic003G059500 Sobic003G059500 Sobic004G167500--Sobic003G059500 Sobic002G215600 Sobic002G215600 Sobic004G167500--Sobic002G215600 Sobic006G049000 Sobic006G049000 Sobic004G167500--Sobic006G049000 Sobic010G187950 Sobic010G187950 Sobic004G167500--Sobic010G187950 Sobic003G356500 Sobic003G356500 Sobic004G167500--Sobic003G356500 Sobic008G153300 Sobic008G153300 Sobic004G167500--Sobic008G153300 Sobic001G071500 Sobic001G071500 Sobic004G167500--Sobic001G071500 Sobic003G438100 Sobic003G438100 Sobic004G167500--Sobic003G438100 Sobic001G468900 Sobic001G468900 Sobic004G167500--Sobic001G468900 Sobic004G045000 Sobic004G045000 Sobic003G059500--Sobic004G045000 Sobic003G059500--Sobic003G356500 Sobic010G000401 Sobic010G000401 Sobic003G059500--Sobic010G000401 Sobic003G059500--Sobic001G468900 Sobic004G089801 Sobic004G089801 Sobic003G059500--Sobic004G089801 Sobic001G005100 Sobic001G005100 Sobic003G059500--Sobic001G005100 Sobic003G059500--Sobic004G167500 Sobic003G059500--Sobic002G215600 Sobic003G149700 Sobic003G149700 Sobic003G059500--Sobic003G149700 Sobic002G215600--Sobic006G049000 Sobic002G215600--Sobic008G153300 Sobic002G215600--Sobic003G059500 Sobic002G215600--Sobic004G167500 Sobic002G215600--Sobic004G045000 Sobic002G215600--Sobic003G356500 Sobic002G215600--Sobic003G438100 Sobic002G215600--Sobic001G468900 Sobic001G367900 Sobic001G367900 Sobic002G215600--Sobic001G367900 Sobic001G273950 Sobic001G273950 Sobic006G049000--Sobic001G273950 Sobic006G049000--Sobic002G215600 Sobic002G015950 Sobic002G015950 Sobic006G049000--Sobic002G015950 Sobic006G049000--Sobic001G071500 Sobic008G030801 Sobic008G030801 Sobic006G049000--Sobic008G030801 Sobic001G442750 Sobic001G442750 Sobic006G049000--Sobic001G442750 Sobic006G161200 Sobic006G161200 Sobic006G049000--Sobic006G161200 Sobic006G049000--Sobic004G167500 Sobic009G193600 Sobic009G193600 Sobic006G049000--Sobic009G193600 Sobic001G228500 Sobic001G228500 Sobic010G187950--Sobic001G228500 Sobic007G224700 Sobic007G224700 Sobic010G187950--Sobic007G224700 Sobic002G043201 Sobic002G043201 Sobic010G187950--Sobic002G043201 Sobic010G015400 Sobic010G015400 Sobic010G187950--Sobic010G015400 Sobic010G187950--Sobic008G153300 Sobic010G187950--Sobic004G167500 Sobic002G426201 Sobic002G426201 Sobic010G187950--Sobic002G426201 Sobic010G187950--Sobic002G215600 Sobic002G274000 Sobic002G274000 Sobic010G187950--Sobic002G274000 Sobic003G356500--Sobic003G149700 Sobic005G150250 Sobic005G150250 Sobic003G356500--Sobic005G150250 Sobic006G155400 Sobic006G155400 Sobic003G356500--Sobic006G155400 Sobic002G132201 Sobic002G132201 Sobic003G356500--Sobic002G132201 Sobic009G022600 Sobic009G022600 Sobic003G356500--Sobic009G022600 Sobic003G356500--Sobic001G468900 Sobic003G193900 Sobic003G193900 Sobic003G356500--Sobic003G193900 Sobic003G356500--Sobic003G059500 Sobic003G356500--Sobic004G089801 Sobic008G153300--Sobic002G215600 Sobic008G153300--Sobic007G224700 Sobic008G153300--Sobic010G015400 Sobic008G153300--Sobic010G187950 Sobic004G273550 Sobic004G273550 Sobic008G153300--Sobic004G273550 Sobic008G153300--Sobic004G167500 Sobic008G153300--Sobic003G438100 Sobic009G079700 Sobic009G079700 Sobic008G153300--Sobic009G079700 Sobic007G210200 Sobic007G210200 Sobic008G153300--Sobic007G210200 Sobic002G054800 Sobic002G054800 Sobic001G071500--Sobic002G054800 Sobic005G073300 Sobic005G073300 Sobic001G071500--Sobic005G073300 Sobic002G240200 Sobic002G240200 Sobic001G071500--Sobic002G240200 Sobic010G215201 Sobic010G215201 Sobic001G071500--Sobic010G215201 Sobic001G071500--Sobic002G132201 Sobic001G071500--Sobic008G030801 Sobic002G172300 Sobic002G172300 Sobic001G071500--Sobic002G172300 Sobic001G071500--Sobic003G149700 Sobic001G371650 Sobic001G371650 Sobic001G071500--Sobic001G371650 Sobic010G168100 Sobic010G168100 Sobic003G438100--Sobic010G168100 Sobic005G205100 Sobic005G205100 Sobic003G438100--Sobic005G205100 Sobic003G438100--Sobic001G442750 Sobic003G438100--Sobic006G161200 Sobic001G310000 Sobic001G310000 Sobic003G438100--Sobic001G310000 Sobic003G337900 Sobic003G337900 Sobic003G438100--Sobic003G337900 Sobic003G438100--Sobic008G030801 Sobic003G438100--Sobic010G015400 Sobic003G071800 Sobic003G071800 Sobic003G438100--Sobic003G071800 Sobic001G468900--Sobic003G356500 Sobic001G468900--Sobic003G059500 Sobic001G468900--Sobic006G155400 Sobic001G468900--Sobic002G132201 Sobic001G468900--Sobic003G149700 Sobic001G468900--Sobic005G150250 Sobic001G468900--Sobic002G054800 Sobic001G468900--Sobic005G073300 Sobic001G468900--Sobic009G022600
Octagon: transcription factors


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