Gene annotation
Transcriptome id Sobic.002G215600.1
Synonym Sb02g025780
Functional annotation BRCA1 C Terminus domain containing protein, expressed
UniProt A0A1B6QCS2
Pfam PF12738
Panther DB PTHR13561 PTHR13561:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G43930 : BRCT domain-containing DNA repair protein
RAP-DB (Rice) LOC_Os09g26870.1 : BRCA1 C Terminus domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047148
Brachypodium KQJ90403 , PNT64680
Barley HORVU5Hr1G062110.11 , HORVU5Hr1G062110.10 , HORVU5Hr1G062110.1 , HORVU5Hr1G062110.3 , HORVU5Hr1G062110.2 , HORVU5Hr1G062110.5 , HORVU5Hr1G062110.4 , HORVU5Hr1G062110.7 , HORVU5Hr1G062110.6 , HORVU5Hr1G062110.9 , HORVU5Hr1G062110.8
Wheat -
Populus -


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cDNA sequences
Sobic.002G215600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G049000 - -
2 Sobic.008G153300 RING-H2 finger protein ATL3J, putative, expressed K10663: E3 ubiquitin-protein ligase ATL4
3 Sobic.003G059500 verticillium wilt disease resistance protein, putative, expressed -
4 Sobic.004G167500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G045000 phytosulfokine receptor precursor, putative, expressed -
6 Sobic.003G356500 "uncharacterized lipid transporters, up-regulated under drought stress, mapped into a QTL involved in pre-flowering drought tolerance (QSTG2_4)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
7 Sobic.003G438100 expressed protein -
8 Sobic.001G468900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@DUF623 domain containing protein, expressed -
9 Sobic.001G367900 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@annexin, putative, expressed -
10 Sobic.010G187950 - -
11 Sobic.001G273950 - -
12 Sobic.001G442750 - -
13 Sobic.008G164850 - -
14 Sobic.004G089801 - -
15 Sobic.007G187500 - -
16 Sobic.010G015400 pentatricopeptide, putative, expressed -
17 Sobic.001G071500 - -
18 Sobic.004G007200 - -
19 Sobic.010G000401 - -
20 Sobic.010G210400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -


Gene co-expression network
sample Sobic002G215600 Sobic002G215600 Sobic006G049000 Sobic006G049000 Sobic002G215600--Sobic006G049000 Sobic008G153300 Sobic008G153300 Sobic002G215600--Sobic008G153300 Sobic003G059500 Sobic003G059500 Sobic002G215600--Sobic003G059500 Sobic004G167500 Sobic004G167500 Sobic002G215600--Sobic004G167500 Sobic004G045000 Sobic004G045000 Sobic002G215600--Sobic004G045000 Sobic003G356500 Sobic003G356500 Sobic002G215600--Sobic003G356500 Sobic003G438100 Sobic003G438100 Sobic002G215600--Sobic003G438100 Sobic001G468900 Sobic001G468900 Sobic002G215600--Sobic001G468900 Sobic001G367900 Sobic001G367900 Sobic002G215600--Sobic001G367900 Sobic001G273950 Sobic001G273950 Sobic006G049000--Sobic001G273950 Sobic006G049000--Sobic002G215600 Sobic002G015950 Sobic002G015950 Sobic006G049000--Sobic002G015950 Sobic001G071500 Sobic001G071500 Sobic006G049000--Sobic001G071500 Sobic008G030801 Sobic008G030801 Sobic006G049000--Sobic008G030801 Sobic001G442750 Sobic001G442750 Sobic006G049000--Sobic001G442750 Sobic006G161200 Sobic006G161200 Sobic006G049000--Sobic006G161200 Sobic006G049000--Sobic004G167500 Sobic009G193600 Sobic009G193600 Sobic006G049000--Sobic009G193600 Sobic008G153300--Sobic002G215600 Sobic007G224700 Sobic007G224700 Sobic008G153300--Sobic007G224700 Sobic010G015400 Sobic010G015400 Sobic008G153300--Sobic010G015400 Sobic010G187950 Sobic010G187950 Sobic008G153300--Sobic010G187950 Sobic004G273550 Sobic004G273550 Sobic008G153300--Sobic004G273550 Sobic008G153300--Sobic004G167500 Sobic008G153300--Sobic003G438100 Sobic009G079700 Sobic009G079700 Sobic008G153300--Sobic009G079700 Sobic007G210200 Sobic007G210200 Sobic008G153300--Sobic007G210200 Sobic003G059500--Sobic004G045000 Sobic003G059500--Sobic003G356500 Sobic010G000401 Sobic010G000401 Sobic003G059500--Sobic010G000401 Sobic003G059500--Sobic001G468900 Sobic004G089801 Sobic004G089801 Sobic003G059500--Sobic004G089801 Sobic001G005100 Sobic001G005100 Sobic003G059500--Sobic001G005100 Sobic003G059500--Sobic004G167500 Sobic003G059500--Sobic002G215600 Sobic003G149700 Sobic003G149700 Sobic003G059500--Sobic003G149700 Sobic004G167500--Sobic003G059500 Sobic004G167500--Sobic002G215600 Sobic004G167500--Sobic006G049000 Sobic004G167500--Sobic010G187950 Sobic004G167500--Sobic003G356500 Sobic004G167500--Sobic008G153300 Sobic004G167500--Sobic001G071500 Sobic004G167500--Sobic003G438100 Sobic004G167500--Sobic001G468900 Sobic004G045000--Sobic003G059500 Sobic004G045000--Sobic010G000401 Sobic004G045000--Sobic001G005100 Sobic003G391800 Sobic003G391800 Sobic004G045000--Sobic003G391800 Sobic003G278800 Sobic003G278800 Sobic004G045000--Sobic003G278800 Sobic002G268250 Sobic002G268250 Sobic004G045000--Sobic002G268250 Sobic004G045000--Sobic002G215600 Sobic002G162900 Sobic002G162900 Sobic004G045000--Sobic002G162900 Sobic004G045000--Sobic003G356500 Sobic003G356500--Sobic003G149700 Sobic005G150250 Sobic005G150250 Sobic003G356500--Sobic005G150250 Sobic006G155400 Sobic006G155400 Sobic003G356500--Sobic006G155400 Sobic002G132201 Sobic002G132201 Sobic003G356500--Sobic002G132201 Sobic009G022600 Sobic009G022600 Sobic003G356500--Sobic009G022600 Sobic003G356500--Sobic001G468900 Sobic003G193900 Sobic003G193900 Sobic003G356500--Sobic003G193900 Sobic003G356500--Sobic003G059500 Sobic003G356500--Sobic004G089801 Sobic010G168100 Sobic010G168100 Sobic003G438100--Sobic010G168100 Sobic005G205100 Sobic005G205100 Sobic003G438100--Sobic005G205100 Sobic003G438100--Sobic001G442750 Sobic003G438100--Sobic006G161200 Sobic001G310000 Sobic001G310000 Sobic003G438100--Sobic001G310000 Sobic003G337900 Sobic003G337900 Sobic003G438100--Sobic003G337900 Sobic003G438100--Sobic008G030801 Sobic003G438100--Sobic010G015400 Sobic003G071800 Sobic003G071800 Sobic003G438100--Sobic003G071800 Sobic001G468900--Sobic003G356500 Sobic001G468900--Sobic003G059500 Sobic001G468900--Sobic006G155400 Sobic001G468900--Sobic002G132201 Sobic001G468900--Sobic003G149700 Sobic001G468900--Sobic005G150250 Sobic002G054800 Sobic002G054800 Sobic001G468900--Sobic002G054800 Sobic005G073300 Sobic005G073300 Sobic001G468900--Sobic005G073300 Sobic001G468900--Sobic009G022600 Sobic007G010400 Sobic007G010400 Sobic001G367900--Sobic007G010400 Sobic003G149400 Sobic003G149400 Sobic001G367900--Sobic003G149400 Sobic008G065700 Sobic008G065700 Sobic001G367900--Sobic008G065700 Sobic001G367900--Sobic007G210200 Sobic003G331200 Sobic003G331200 Sobic001G367900--Sobic003G331200 Sobic004G000500 Sobic004G000500 Sobic001G367900--Sobic004G000500 Sobic007G226000 Sobic007G226000 Sobic001G367900--Sobic007G226000 Sobic003G092150 Sobic003G092150 Sobic001G367900--Sobic003G092150 Sobic009G122000 Sobic009G122000 Sobic001G367900--Sobic009G122000
Octagon: transcription factors


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