Gene annotation
Transcriptome id Sobic.004G169600.1
Synonym Sb04g022100
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A194YQ85
Pfam PF00400
Panther DB PTHR14221 PTHR14221:SF10
NCBI CDD KOG0283; WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G53500 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g33630.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020598
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G066700 OsFBL33 - F-box domain and LRR containing protein, expressed -
2 Sobic.002G147400 homeodomain-related, putative, expressed -
3 Sobic.005G201200 - -
4 Sobic.006G038700 - -
5 Sobic.009G056900 acetyltransferase, GNAT family protein, expressed -
6 Sobic.003G255700 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
7 Sobic.010G198400 expressed protein -
8 Sobic.002G060400 OsFBX237 - F-box domain containing protein, expressed -
9 Sobic.002G304500 mutS family domain IV containing protein, expressed K08740: DNA mismatch repair protein MSH4
10 Sobic.009G006700 vacuolar ATP synthase, putative, expressed K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
11 Sobic.002G016000 OsFBL32 - F-box domain and LRR containing protein, expressed -
12 Sobic.004G064800 haemolysin-III, putative, expressed K07297: adiponectin receptor
13 Sobic.008G013200 expressed protein -
14 Sobic.001G075201 - -
15 Sobic.008G007700 expressed protein -
16 Sobic.001G392700 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
17 Sobic.002G361500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@Indole-acetic acid (IAA)-amido synthetase(PubMedID : 30367619)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
18 Sobic.005G206800 expressed protein -
19 Sobic.008G007800 - -
20 Sobic.001G194500 - -


Gene co-expression network
sample Sobic004G169600 Sobic004G169600 Sobic002G066700 Sobic002G066700 Sobic004G169600--Sobic002G066700 Sobic002G147400 Sobic002G147400 Sobic004G169600--Sobic002G147400 Sobic005G201200 Sobic005G201200 Sobic004G169600--Sobic005G201200 Sobic006G038700 Sobic006G038700 Sobic004G169600--Sobic006G038700 Sobic009G056900 Sobic009G056900 Sobic004G169600--Sobic009G056900 Sobic003G255700 Sobic003G255700 Sobic004G169600--Sobic003G255700 Sobic010G198400 Sobic010G198400 Sobic004G169600--Sobic010G198400 Sobic002G060400 Sobic002G060400 Sobic004G169600--Sobic002G060400 Sobic002G304500 Sobic002G304500 Sobic004G169600--Sobic002G304500 Sobic002G066700--Sobic009G056900 Sobic002G066700--Sobic002G147400 Sobic001G392700 Sobic001G392700 Sobic002G066700--Sobic001G392700 Sobic002G066700--Sobic005G201200 Sobic007G086701 Sobic007G086701 Sobic002G066700--Sobic007G086701 Sobic002G066700--Sobic006G038700 Sobic001G264600 Sobic001G264600 Sobic002G066700--Sobic001G264600 Sobic005G206800 Sobic005G206800 Sobic002G066700--Sobic005G206800 Sobic002G016000 Sobic002G016000 Sobic002G066700--Sobic002G016000 Sobic002G147400--Sobic009G056900 Sobic002G147400--Sobic002G066700 Sobic002G147400--Sobic001G392700 Sobic001G075201 Sobic001G075201 Sobic002G147400--Sobic001G075201 Sobic002G147400--Sobic005G201200 Sobic001G075200 Sobic001G075200 Sobic002G147400--Sobic001G075200 Sobic002G147400--Sobic006G038700 Sobic001G194500 Sobic001G194500 Sobic002G147400--Sobic001G194500 Sobic002G147400--Sobic002G016000 Sobic005G201200--Sobic002G016000 Sobic008G007800 Sobic008G007800 Sobic005G201200--Sobic008G007800 Sobic005G201200--Sobic006G038700 Sobic004G064800 Sobic004G064800 Sobic005G201200--Sobic004G064800 Sobic009G006700 Sobic009G006700 Sobic005G201200--Sobic009G006700 Sobic010G255400 Sobic010G255400 Sobic005G201200--Sobic010G255400 Sobic005G201200--Sobic002G066700 Sobic005G201200--Sobic002G304500 Sobic005G201200--Sobic002G147400 Sobic006G038700--Sobic009G006700 Sobic001G117701 Sobic001G117701 Sobic006G038700--Sobic001G117701 Sobic006G038700--Sobic005G201200 Sobic006G038700--Sobic002G016000 Sobic008G105600 Sobic008G105600 Sobic006G038700--Sobic008G105600 Sobic010G143633 Sobic010G143633 Sobic006G038700--Sobic010G143633 Sobic002G361500 Sobic002G361500 Sobic006G038700--Sobic002G361500 Sobic005G144500 Sobic005G144500 Sobic006G038700--Sobic005G144500 Sobic006G038700--Sobic010G198400 Sobic009G056900--Sobic002G066700 Sobic009G056900--Sobic001G392700 Sobic009G056900--Sobic002G147400 Sobic009G056900--Sobic001G075201 Sobic009G056900--Sobic005G201200 Sobic009G056900--Sobic006G038700 Sobic009G056900--Sobic002G016000 Sobic002G266600 Sobic002G266600 Sobic009G056900--Sobic002G266600 Sobic003G167200 Sobic003G167200 Sobic009G056900--Sobic003G167200 Sobic006G100266 Sobic006G100266 Sobic003G255700--Sobic006G100266 Sobic003G308300 Sobic003G308300 Sobic003G255700--Sobic003G308300 Sobic009G186700 Sobic009G186700 Sobic003G255700--Sobic009G186700 Sobic003G255700--Sobic002G066700 Sobic001G305900 Sobic001G305900 Sobic003G255700--Sobic001G305900 Sobic008G013200 Sobic008G013200 Sobic003G255700--Sobic008G013200 Sobic003G255700--Sobic002G016000 Sobic001G050500 Sobic001G050500 Sobic003G255700--Sobic001G050500 Sobic003G255700--Sobic005G201200 Sobic002G424200 Sobic002G424200 Sobic010G198400--Sobic002G424200 Sobic010G038000 Sobic010G038000 Sobic010G198400--Sobic010G038000 Sobic006G254400 Sobic006G254400 Sobic010G198400--Sobic006G254400 Sobic010G198400--Sobic009G006700 Sobic009G048700 Sobic009G048700 Sobic010G198400--Sobic009G048700 Sobic004G020200 Sobic004G020200 Sobic010G198400--Sobic004G020200 Sobic002G243400 Sobic002G243400 Sobic010G198400--Sobic002G243400 Sobic006G199500 Sobic006G199500 Sobic010G198400--Sobic006G199500 Sobic009G008000 Sobic009G008000 Sobic010G198400--Sobic009G008000 Sobic002G060400--Sobic002G304500 Sobic002G060400--Sobic004G064800 Sobic002G060400--Sobic005G201200 Sobic002G060400--Sobic010G255400 Sobic008G041300 Sobic008G041300 Sobic002G060400--Sobic008G041300 Sobic001G076600 Sobic001G076600 Sobic002G060400--Sobic001G076600 Sobic007G060100 Sobic007G060100 Sobic002G060400--Sobic007G060100 Sobic002G015700 Sobic002G015700 Sobic002G060400--Sobic002G015700 Sobic002G158300 Sobic002G158300 Sobic002G060400--Sobic002G158300 Sobic002G304500--Sobic004G064800 Sobic002G304500--Sobic005G201200 Sobic002G304500--Sobic008G007800 Sobic002G304500--Sobic010G255400 Sobic002G304500--Sobic002G016000 Sobic002G304500--Sobic006G199500 Sobic004G328100 Sobic004G328100 Sobic002G304500--Sobic004G328100 Sobic008G007700 Sobic008G007700 Sobic002G304500--Sobic008G007700 Sobic004G038400 Sobic004G038400 Sobic002G304500--Sobic004G038400
Octagon: transcription factors


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